Transcript: ENST00000500989.4 LINC00861-201

Description

long intergenic non-protein coding RNA 861 [Source:HGNC Symbol;Acc:HGNC:45133]

Location

Chromosome 8: 125,941,129-125,951,256 reverse strand.

About this transcript

This transcript has 2 exons and maps to 196 oligo probes.

Gene

This transcript is a product of gene ENSG00000245164.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000651482.1	LINC00861-205	1448	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000500989.4	LINC00861-201	5397	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000651667.1	LINC00861-206	2210	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000843702.1	LINC00861-219	1644	No protein	-	lncRNA	-	-
ENST00000843703.1	LINC00861-220	1497	No protein	-	lncRNA	-	-
ENST00000702373.2	LINC00861-212	1253	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000691489.2	LINC00861-211	1218	No protein	-	lncRNA	-	-
ENST00000517869.3	LINC00861-202	1201	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000843700.1	LINC00861-217	1191	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000652311.1	LINC00861-207	1170	No protein	-	lncRNA	-	-
ENST00000843699.1	LINC00861-216	1071	No protein	-	lncRNA	-	-
ENST00000662179.2	LINC00861-209	1020	No protein	-	lncRNA	-	-
ENST00000661778.1	LINC00861-208	968	No protein	-	lncRNA	-	-
ENST00000518964.6	LINC00861-203	935	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000843696.1	LINC00861-213	928	No protein	-	lncRNA	-	-
ENST00000843704.1	LINC00861-221	873	No protein	-	lncRNA	-	-
ENST00000843698.1	LINC00861-215	846	No protein	-	lncRNA	-	-
ENST00000843701.1	LINC00861-218	843	No protein	-	lncRNA	-	-
ENST00000689131.1	LINC00861-210	695	No protein	-	lncRNA	-	-
ENST00000843697.1	LINC00861-214	668	No protein	-	lncRNA	-	-
ENST00000843709.1	LINC00861-226	642	No protein	-	lncRNA	-	-
ENST00000843708.1	LINC00861-225	616	No protein	-	lncRNA	-	-
ENST00000522865.5	LINC00861-204	571	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000843706.1	LINC00861-223	516	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000843710.1	LINC00861-227	430	No protein	-	lncRNA	-	-
ENST00000843707.1	LINC00861-224	429	No protein	-	lncRNA	-	-
ENST00000843705.1	LINC00861-222	352	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 5,397 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000500989.4

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000500989.4 LINC00861-201

Summary

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Transcript: ENST00000500989.4 LINC00861-201

Summary

About Us

Get help

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