Transcript: ENST00000418358.2 LINC00299-201

Description

long intergenic non-protein coding RNA 299 [Source:HGNC Symbol;Acc:HGNC:27940]

Gene Synonyms

C2ORF46, FLJ45673, NCRNA00299

Location

Chromosome 2: 8,543,556-8,575,501 reverse strand.

About this transcript

This transcript has 3 exons and maps to 121 oligo probes.

Gene

This transcript is a product of gene ENSG00000236790.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000663636.1	LINC00299-224	1637	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000454224.1	LINC00299-208	8839	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000668575.1	LINC00299-233	3830	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000662336.1	LINC00299-222	3752	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000764365.1	LINC00299-264	2821	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654099.2	LINC00299-213	2788	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000764379.1	LINC00299-278	2384	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000657310.1	LINC00299-218	2376	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000764356.1	LINC00299-255	2366	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000442956.1	LINC00299-205	2342	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000685270.1	LINC00299-237	2278	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000426969.5	LINC00299-202	2236	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000454043.2	LINC00299-207	2187	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000664728.2	LINC00299-228	2145	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000764359.1	LINC00299-258	2002	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000764366.1	LINC00299-265	1993	No protein	-	lncRNA	-	-
ENST00000779388.1	LINC00299-315	1957	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000665772.1	LINC00299-229	1932	No protein	-	lncRNA	-	-
ENST00000664226.1	LINC00299-226	1899	No protein	-	lncRNA	-	-
ENST00000430192.5	LINC00299-203	1760	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000764355.1	LINC00299-254	1754	No protein	-	lncRNA	-	-
ENST00000764360.1	LINC00299-259	1712	No protein	-	lncRNA	-	-
ENST00000670008.1	LINC00299-235	1711	No protein	-	lncRNA	-	-
ENST00000715734.1	LINC00299-248	1643	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000648035.1	LINC00299-210	1600	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000764358.1	LINC00299-257	1574	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000779385.1	LINC00299-312	1548	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000666457.1	LINC00299-230	1527	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000761483.1	LINC00299-251	1517	No protein	-	lncRNA	-	-
ENST00000761482.1	LINC00299-250	1502	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655006.1	LINC00299-214	1489	No protein	-	lncRNA	-	-
ENST00000764405.1	LINC00299-304	1464	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658862.2	LINC00299-219	1462	No protein	-	lncRNA	-	-
ENST00000764362.1	LINC00299-261	1443	No protein	-	lncRNA	-	-
ENST00000764369.1	LINC00299-268	1436	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000692033.2	LINC00299-243	1423	No protein	-	lncRNA	-	-
ENST00000764404.1	LINC00299-303	1403	No protein	-	lncRNA	-	-
ENST00000779391.1	LINC00299-318	1382	No protein	-	lncRNA	-	-
ENST00000667380.1	LINC00299-231	1378	No protein	-	lncRNA	-	-
ENST00000764374.1	LINC00299-273	1361	No protein	-	lncRNA	-	-
ENST00000669954.1	LINC00299-234	1333	No protein	-	lncRNA	-	-
ENST00000657091.2	LINC00299-217	1308	No protein	-	lncRNA	-	-
ENST00000761484.1	LINC00299-252	1307	No protein	-	lncRNA	-	-
ENST00000650238.2	LINC00299-212	1303	No protein	-	lncRNA	-	-
ENST00000702154.1	LINC00299-245	1267	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000764361.1	LINC00299-260	1254	No protein	-	lncRNA	-	-
ENST00000764380.1	LINC00299-279	1248	No protein	-	lncRNA	-	-
ENST00000764367.1	LINC00299-266	1196	No protein	-	lncRNA	-	-
ENST00000685893.1	LINC00299-238	1195	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000761485.1	LINC00299-253	1190	No protein	-	lncRNA	-	-
ENST00000764407.1	LINC00299-306	1187	No protein	-	lncRNA	-	-
ENST00000779390.1	LINC00299-317	1156	No protein	-	lncRNA	-	-
ENST00000764376.1	LINC00299-275	1155	No protein	-	lncRNA	-	-
ENST00000715733.1	LINC00299-247	1150	No protein	-	lncRNA	-	-
ENST00000779393.1	LINC00299-320	1140	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655671.1	LINC00299-216	1138	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000764373.1	LINC00299-272	1138	No protein	-	lncRNA	-	-
ENST00000779387.1	LINC00299-314	1115	No protein	-	lncRNA	-	-
ENST00000664719.2	LINC00299-227	1114	No protein	-	lncRNA	-	-
ENST00000660229.1	LINC00299-220	1107	No protein	-	lncRNA	-	-
ENST00000764375.1	LINC00299-274	1083	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000662379.1	LINC00299-223	1080	No protein	-	lncRNA	-	-
ENST00000764383.1	LINC00299-282	1080	No protein	-	lncRNA	-	-
ENST00000418358.2	LINC00299-201	1072	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000764390.1	LINC00299-289	1062	No protein	-	lncRNA	-	-
ENST00000661371.1	LINC00299-221	1045	No protein	-	lncRNA	-	-
ENST00000764387.1	LINC00299-286	1041	No protein	-	lncRNA	-	-
ENST00000655346.2	LINC00299-215	1040	No protein	-	lncRNA	-	-
ENST00000689905.2	LINC00299-240	1039	No protein	-	lncRNA	-	-
ENST00000764370.1	LINC00299-269	1035	No protein	-	lncRNA	-	-
ENST00000686209.2	LINC00299-239	1030	No protein	-	lncRNA	-	-
ENST00000764381.1	LINC00299-280	1027	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000764394.1	LINC00299-293	1017	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000764378.1	LINC00299-277	974	No protein	-	lncRNA	-	-
ENST00000764363.1	LINC00299-262	962	No protein	-	lncRNA	-	-
ENST00000764385.1	LINC00299-284	962	No protein	-	lncRNA	-	-
ENST00000764391.1	LINC00299-290	958	No protein	-	lncRNA	-	-
ENST00000764384.1	LINC00299-283	955	No protein	-	lncRNA	-	-
ENST00000764398.1	LINC00299-297	944	No protein	-	lncRNA	-	-
ENST00000764372.1	LINC00299-271	941	No protein	-	lncRNA	-	-
ENST00000436187.3	LINC00299-204	919	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000764357.1	LINC00299-256	917	No protein	-	lncRNA	-	-
ENST00000764395.1	LINC00299-294	910	No protein	-	lncRNA	-	-
ENST00000702808.2	LINC00299-246	891	No protein	-	lncRNA	-	-
ENST00000691773.2	LINC00299-241	889	No protein	-	lncRNA	-	-
ENST00000764406.1	LINC00299-305	872	No protein	-	lncRNA	-	-
ENST00000691916.2	LINC00299-242	853	No protein	-	lncRNA	-	-
ENST00000670389.2	LINC00299-236	847	No protein	-	lncRNA	-	-
ENST00000764403.1	LINC00299-302	827	No protein	-	lncRNA	-	-
ENST00000764392.1	LINC00299-291	819	No protein	-	lncRNA	-	-
ENST00000764399.1	LINC00299-298	815	No protein	-	lncRNA	-	-
ENST00000648900.3	LINC00299-211	814	No protein	-	lncRNA	-	-
ENST00000764371.1	LINC00299-270	786	No protein	-	lncRNA	-	-
ENST00000701314.2	LINC00299-244	770	No protein	-	lncRNA	-	-
ENST00000764397.1	LINC00299-296	768	No protein	-	lncRNA	-	-
ENST00000764388.1	LINC00299-287	760	No protein	-	lncRNA	-	-
ENST00000456681.1	LINC00299-209	746	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000764386.1	LINC00299-285	739	No protein	-	lncRNA	-	-
ENST00000764368.1	LINC00299-267	722	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668369.1	LINC00299-232	715	No protein	-	lncRNA	-	-
ENST00000764393.1	LINC00299-292	697	No protein	-	lncRNA	-	-
ENST00000764401.1	LINC00299-300	693	No protein	-	lncRNA	-	-
ENST00000779389.1	LINC00299-316	692	No protein	-	lncRNA	-	-
ENST00000779392.1	LINC00299-319	683	No protein	-	lncRNA	-	-
ENST00000664004.2	LINC00299-225	625	No protein	-	lncRNA	-	-
ENST00000779383.1	LINC00299-310	623	No protein	-	lncRNA	-	-
ENST00000764377.1	LINC00299-276	582	No protein	-	lncRNA	-	-
ENST00000764408.1	LINC00299-307	560	No protein	-	lncRNA	-	-
ENST00000444688.1	LINC00299-206	537	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000764396.1	LINC00299-295	535	No protein	-	lncRNA	-	-
ENST00000764409.1	LINC00299-308	520	No protein	-	lncRNA	-	-
ENST00000764364.1	LINC00299-263	475	No protein	-	lncRNA	-	-
ENST00000761481.1	LINC00299-249	442	No protein	-	lncRNA	-	-
ENST00000764382.1	LINC00299-281	409	No protein	-	lncRNA	-	-
ENST00000764410.1	LINC00299-309	388	No protein	-	lncRNA	-	-
ENST00000764402.1	LINC00299-301	367	No protein	-	lncRNA	-	-
ENST00000779384.1	LINC00299-311	349	No protein	-	lncRNA	-	-
ENST00000764400.1	LINC00299-299	340	No protein	-	lncRNA	-	-
ENST00000764389.1	LINC00299-288	332	No protein	-	lncRNA	-	-
ENST00000779386.1	LINC00299-313	271	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,072 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENST00000418358.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000418358.2 LINC00299-201

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Transcript: ENST00000418358.2 LINC00299-201

Summary

About Us

Get help

Our sister sites

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