Transcript: ENST00000439488.2 LINC01134-202

Description

long intergenic non-protein coding RNA 1134 [Source:HGNC Symbol;Acc:HGNC:49449]

Gene Synonyms

TLNC1

Location

Chromosome 1: 3,900,390-3,915,447 forward strand.

About this transcript

This transcript has 4 exons and maps to 419 oligo probes.

Gene

This transcript is a product of gene ENSG00000236423.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000686089.3	LINC01134-205	1344	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000442673.3	LINC01134-203	3116	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000757273.1	LINC01134-215	2057	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000439488.2	LINC01134-202	1966	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000757267.1	LINC01134-209	1582	No protein	-	lncRNA	-	-
ENST00000757280.1	LINC01134-222	1575	No protein	-	lncRNA	-	-
ENST00000757277.1	LINC01134-219	1510	No protein	-	lncRNA	-	-
ENST00000757266.1	LINC01134-208	1419	No protein	-	lncRNA	-	-
ENST00000757271.1	LINC01134-213	1396	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000757274.1	LINC01134-216	1378	No protein	-	lncRNA	-	-
ENST00000757278.1	LINC01134-220	1316	No protein	-	lncRNA	-	-
ENST00000757269.1	LINC01134-211	1286	No protein	-	lncRNA	-	-
ENST00000693306.2	LINC01134-206	1244	No protein	-	lncRNA	-	-
ENST00000413332.7	LINC01134-201	1237	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000757272.1	LINC01134-214	1223	No protein	-	lncRNA	-	-
ENST00000757275.1	LINC01134-217	1110	No protein	-	lncRNA	-	-
ENST00000757279.1	LINC01134-221	1092	No protein	-	lncRNA	-	-
ENST00000757276.1	LINC01134-218	1066	No protein	-	lncRNA	-	-
ENST00000757281.1	LINC01134-223	1039	No protein	-	lncRNA	-	-
ENST00000757268.1	LINC01134-210	874	No protein	-	lncRNA	-	-
ENST00000757270.1	LINC01134-212	611	No protein	-	lncRNA	-	-
ENST00000667408.2	LINC01134-204	545	No protein	-	lncRNA	-	-
ENST00000757282.1	LINC01134-224	495	No protein	-	lncRNA	-	-
ENST00000757265.1	LINC01134-207	453	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,966 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000439488.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000439488.2 LINC01134-202

Summary

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Transcript: ENST00000439488.2 LINC01134-202

Summary

About Us

Get help

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