Transcript: ENST00000663308.1 LINC02889-216

Description

long intergenic non-protein coding RNA 2889 [Source:HGNC Symbol;Acc:HGNC:55071]

Location

Chromosome 7: 17,456,447-17,524,150 reverse strand.

About this transcript

This transcript has 9 exons and maps to 302 oligo probes.

Gene

This transcript is a product of gene ENSG00000236039.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000636929.1	LINC02889-204	1462	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000658415.1	LINC02889-210	1998	No protein	-	lncRNA	-	-
ENST00000659688.1	LINC02889-212	1971	No protein	-	lncRNA	-	-
ENST00000668924.1	LINC02889-219	1943	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000657616.1	LINC02889-209	1937	No protein	-	lncRNA	-	-
ENST00000659904.1	LINC02889-213	1875	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658953.1	LINC02889-211	1852	No protein	-	lncRNA	-	-
ENST00000655831.1	LINC02889-207	1816	No protein	-	lncRNA	-	-
ENST00000664658.1	LINC02889-217	1786	No protein	-	lncRNA	-	-
ENST00000454003.2	LINC02889-203	1721	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000652982.1	LINC02889-205	1421	No protein	-	lncRNA	-	-
ENST00000663308.1	LINC02889-216	1397	No protein	-	lncRNA	-	-
ENST00000670938.1	LINC02889-220	1382	No protein	-	lncRNA	-	-
ENST00000656566.1	LINC02889-208	1357	No protein	-	lncRNA	-	-
ENST00000662264.1	LINC02889-215	1324	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000665552.1	LINC02889-218	1314	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654345.1	LINC02889-206	1098	No protein	-	lncRNA	-	-
ENST00000660262.1	LINC02889-214	624	No protein	-	lncRNA	-	-
ENST00000439046.1	LINC02889-201	589	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000843695.1	LINC02889-225	573	No protein	-	lncRNA	-	-
ENST00000843692.1	LINC02889-222	553	No protein	-	lncRNA	-	-
ENST00000843693.1	LINC02889-223	539	No protein	-	lncRNA	-	-
ENST00000451792.1	LINC02889-202	442	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000843694.1	LINC02889-224	289	No protein	-	lncRNA	-	-
ENST00000838486.1	LINC02889-221	285	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 9, Coding exons: 0, Transcript length: 1,397 bps,

Version

ENST00000663308.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000663308.1 LINC02889-216

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Transcript: ENST00000663308.1 LINC02889-216

Summary

About Us

Get help

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