Transcript: ENST00000422806.2 NKX1-1-201

Description

NK1 homeobox 1 [Source:HGNC Symbol;Acc:HGNC:24975]

Gene Synonyms

HSPX153, SAX2

Location

Chromosome 4: 1,402,932-1,406,442 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 32 domains and features, is associated with 2250 variant alleles and maps to 140 oligo probes.

Gene

This transcript is a product of gene ENSG00000235608.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000422806.2	NKX1-1-201	1347	448aa	ENSP00000407978.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS93464	Q15270	NM_001290079.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 1,347 bps, Translation length: 448 residues

MANE

This MANE Select transcript contains ENSP00000407978 and matches to NM_001290079.1 and NP_001277008.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q15270

CCDS

This transcript is a member of the Human CCDS set: CCDS93464

Transcript Support Level (TSL)

TSL:5

Version

ENST00000422806.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

confirm experimentally [Definitions]

QC splicing correct

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000422806.2 NKX1-1-201

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Transcript: ENST00000422806.2 NKX1-1-201

Summary

About Us

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