Transcript: ENST00000424989.3 LITATS1-201

Description

lncRNA induced by TGF-beta and antagonizes TGF-beta signaling 1 [Source:HGNC Symbol;Acc:HGNC:49453]

Gene Synonyms

LINC01137, LOC728431, ZC3H12A-DT

Location

Chromosome 1: 37,454,872-37,474,432 reverse strand.

About this transcript

This transcript has 3 exons and maps to 269 oligo probes.

Gene

This transcript is a product of gene ENSG00000233621.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000744092.1	LITATS1-208	1111	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000668045.2	LITATS1-202	1895	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000689160.3	LITATS1-204	1827	No protein	-	lncRNA	-	-
ENST00000744096.1	LITATS1-212	1762	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000744111.1	LITATS1-227	1602	No protein	-	lncRNA	-	-
ENST00000744115.1	LITATS1-231	1487	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000744114.1	LITATS1-230	1478	No protein	-	lncRNA	-	-
ENST00000424989.3	LITATS1-201	1423	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000744124.1	LITATS1-240	1399	No protein	-	lncRNA	-	-
ENST00000744113.1	LITATS1-229	1383	No protein	-	lncRNA	-	-
ENST00000744106.1	LITATS1-222	1301	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000689210.2	LITATS1-205	1286	No protein	-	lncRNA	-	-
ENST00000744116.1	LITATS1-232	1280	No protein	-	lncRNA	-	-
ENST00000691215.2	LITATS1-207	1278	No protein	-	lncRNA	-	-
ENST00000744112.1	LITATS1-228	1258	No protein	-	lncRNA	-	-
ENST00000744117.1	LITATS1-233	1186	No protein	-	lncRNA	-	-
ENST00000689916.2	LITATS1-206	1150	No protein	-	lncRNA	-	-
ENST00000744101.1	LITATS1-217	1141	No protein	-	lncRNA	-	-
ENST00000744123.1	LITATS1-239	1099	No protein	-	lncRNA	-	-
ENST00000744095.1	LITATS1-211	1076	No protein	-	lncRNA	-	-
ENST00000744097.1	LITATS1-213	1035	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000744107.1	LITATS1-223	982	No protein	-	lncRNA	-	-
ENST00000744102.1	LITATS1-218	950	No protein	-	lncRNA	-	-
ENST00000744108.1	LITATS1-224	947	No protein	-	lncRNA	-	-
ENST00000744094.1	LITATS1-210	925	No protein	-	lncRNA	-	-
ENST00000744103.1	LITATS1-219	896	No protein	-	lncRNA	-	-
ENST00000744105.1	LITATS1-221	844	No protein	-	lncRNA	-	-
ENST00000744104.1	LITATS1-220	802	No protein	-	lncRNA	-	-
ENST00000744118.1	LITATS1-234	797	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000744100.1	LITATS1-216	779	No protein	-	lncRNA	-	-
ENST00000744093.1	LITATS1-209	751	No protein	-	lncRNA	-	-
ENST00000744099.1	LITATS1-215	710	No protein	-	lncRNA	-	-
ENST00000744120.1	LITATS1-236	678	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000744122.1	LITATS1-238	654	No protein	-	lncRNA	-	-
ENST00000744098.1	LITATS1-214	647	No protein	-	lncRNA	-	-
ENST00000744119.1	LITATS1-235	623	No protein	-	lncRNA	-	-
ENST00000744110.1	LITATS1-226	567	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000687858.2	LITATS1-203	553	No protein	-	lncRNA	-	-
ENST00000744109.1	LITATS1-225	536	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000744121.1	LITATS1-237	502	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,423 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000424989.3

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000424989.3 LITATS1-201

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Transcript: ENST00000424989.3 LITATS1-201

Summary

About Us

Get help

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