Transcript: ENST00000664146.2 FAM242A-207

Description

family with sequence similarity 242 member A [Source:HGNC Symbol;Acc:HGNC:51597]

Gene Synonyms

LINC01598, TCONS_00028363

Location

Chromosome 20: 30,331,079-30,362,145 reverse strand.

About this transcript

This transcript has 4 exons and maps to 187 oligo probes.

Gene

This transcript is a product of gene ENSG00000231934.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000656990.2	FAM242A-204	1559	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670409.1	FAM242A-209	1712	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000829944.1	FAM242A-220	1160	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654097.2	FAM242A-203	1002	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000657151.2	FAM242A-205	932	No protein	-	lncRNA	-	-
ENST00000829937.1	FAM242A-214	917	No protein	-	lncRNA	-	-
ENST00000664146.2	FAM242A-207	884	No protein	-	lncRNA	-	-
ENST00000662035.1	FAM242A-206	882	No protein	-	lncRNA	-	-
ENST00000432067.2	FAM242A-201	873	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000669378.2	FAM242A-208	849	No protein	-	lncRNA	-	-
ENST00000829946.1	FAM242A-222	840	No protein	-	lncRNA	-	-
ENST00000829933.1	FAM242A-210	835	No protein	-	lncRNA	-	-
ENST00000829935.1	FAM242A-212	808	No protein	-	lncRNA	-	-
ENST00000829936.1	FAM242A-213	782	No protein	-	lncRNA	-	-
ENST00000829934.1	FAM242A-211	778	No protein	-	lncRNA	-	-
ENST00000829939.1	FAM242A-216	766	No protein	-	lncRNA	-	-
ENST00000445151.1	FAM242A-202	719	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000829938.1	FAM242A-215	715	No protein	-	lncRNA	-	-
ENST00000829945.1	FAM242A-221	688	No protein	-	lncRNA	-	-
ENST00000829940.1	FAM242A-217	435	No protein	-	lncRNA	-	-
ENST00000829942.1	FAM242A-218	385	No protein	-	lncRNA	-	-
ENST00000829943.1	FAM242A-219	371	No protein	-	lncRNA	-	-
ENST00000829947.1	FAM242A-223	286	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 884 bps,

Version

ENST00000664146.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000664146.2 FAM242A-207

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Transcript: ENST00000664146.2 FAM242A-207

Summary

About Us

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