Transcript: ENST00000670659.1 LINC01273-209

Description

long intergenic non-protein coding RNA 1273 [Source:HGNC Symbol;Acc:HGNC:50329]

Location

Chromosome 20: 50,171,809-50,176,676 forward strand.

About this transcript

This transcript has 3 exons and maps to 107 oligo probes.

Gene

This transcript is a product of gene ENSG00000231742.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000716893.1	LINC01273-210	1212	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000769192.1	LINC01273-225	1020	No protein	-	lncRNA	-	-
ENST00000668708.2	LINC01273-208	1006	No protein	-	lncRNA	-	-
ENST00000769180.1	LINC01273-213	982	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659473.1	LINC01273-204	977	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000716894.1	LINC01273-211	966	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000769187.1	LINC01273-220	966	No protein	-	lncRNA	-	-
ENST00000769179.1	LINC01273-212	938	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670659.1	LINC01273-209	909	No protein	-	lncRNA	-	-
ENST00000665536.1	LINC01273-207	864	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661469.2	LINC01273-205	859	No protein	-	lncRNA	-	-
ENST00000411453.4	LINC01273-201	813	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000427333.7	LINC01273-202	792	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000769181.1	LINC01273-214	764	No protein	-	lncRNA	-	-
ENST00000769189.1	LINC01273-222	730	No protein	-	lncRNA	-	-
ENST00000769188.1	LINC01273-221	727	No protein	-	lncRNA	-	-
ENST00000769183.1	LINC01273-216	688	No protein	-	lncRNA	-	-
ENST00000769182.1	LINC01273-215	686	No protein	-	lncRNA	-	-
ENST00000664618.1	LINC01273-206	685	No protein	-	lncRNA	-	-
ENST00000769190.1	LINC01273-223	664	No protein	-	lncRNA	-	-
ENST00000769191.1	LINC01273-224	573	No protein	-	lncRNA	-	-
ENST00000769184.1	LINC01273-217	546	No protein	-	lncRNA	-	-
ENST00000769185.1	LINC01273-218	538	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000769186.1	LINC01273-219	526	No protein	-	lncRNA	-	-
ENST00000444478.1	LINC01273-203	425	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 909 bps,

Version

ENST00000670659.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000670659.1 LINC01273-209

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Transcript: ENST00000670659.1 LINC01273-209

Summary

About Us

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