Transcript: ENST00000420557.4 LINC00574-201

Description

long intergenic non-protein coding RNA 574 [Source:HGNC Symbol;Acc:HGNC:21598]

Gene Synonyms

C6ORF208, CRALA, DJ182D15.1, FLJ13162

Location

Chromosome 6: 169,790,044-169,802,893 forward strand.

About this transcript

This transcript has 3 exons and maps to 251 oligo probes.

Gene

This transcript is a product of gene ENSG00000231690.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000768725.1	LINC00574-205	719	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000420557.4	LINC00574-201	2615	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000768734.1	LINC00574-214	2548	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000690995.2	LINC00574-204	2418	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000689618.3	LINC00574-203	2243	No protein	-	lncRNA	-	-
ENST00000768742.1	LINC00574-222	1766	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000768739.1	LINC00574-219	1753	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000768743.1	LINC00574-223	1700	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000768731.1	LINC00574-211	1650	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000768736.1	LINC00574-216	1316	No protein	-	lncRNA	-	-
ENST00000768729.1	LINC00574-209	1177	No protein	-	lncRNA	-	-
ENST00000686336.3	LINC00574-202	1129	No protein	-	lncRNA	-	-
ENST00000768730.1	LINC00574-210	1107	No protein	-	lncRNA	-	-
ENST00000768737.1	LINC00574-217	1048	No protein	-	lncRNA	-	-
ENST00000768727.1	LINC00574-207	1036	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000768735.1	LINC00574-215	858	No protein	-	lncRNA	-	-
ENST00000768726.1	LINC00574-206	832	No protein	-	lncRNA	-	-
ENST00000768732.1	LINC00574-212	819	No protein	-	lncRNA	-	-
ENST00000768728.1	LINC00574-208	817	No protein	-	lncRNA	-	-
ENST00000768733.1	LINC00574-213	803	No protein	-	lncRNA	-	-
ENST00000768738.1	LINC00574-218	593	No protein	-	lncRNA	-	-
ENST00000768740.1	LINC00574-220	562	No protein	-	lncRNA	-	-
ENST00000768741.1	LINC00574-221	482	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 2,615 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000420557.4

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000420557.4 LINC00574-201

Summary

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Transcript: ENST00000420557.4 LINC00574-201

Summary

About Us

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