Transcript: ENST00000430623.5 LPGAT1-AS1-202

Description

LPGAT1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:41221]

Location

Chromosome 1: 211,830,961-211,853,643 forward strand.

About this transcript

This transcript has 6 exons and maps to 152 oligo probes.

Gene

This transcript is a product of gene ENSG00000229258.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000799847.1	LPGAT1-AS1-206	700	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000799866.1	LPGAT1-AS1-225	945	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000799860.1	LPGAT1-AS1-219	944	No protein	-	lncRNA	-	-
ENST00000799863.1	LPGAT1-AS1-222	914	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000799859.1	LPGAT1-AS1-218	881	No protein	-	lncRNA	-	-
ENST00000799862.1	LPGAT1-AS1-221	857	No protein	-	lncRNA	-	-
ENST00000799861.1	LPGAT1-AS1-220	841	No protein	-	lncRNA	-	-
ENST00000799849.1	LPGAT1-AS1-208	838	No protein	-	lncRNA	-	-
ENST00000670360.2	LPGAT1-AS1-205	836	No protein	-	lncRNA	-	-
ENST00000799867.1	LPGAT1-AS1-226	821	No protein	-	lncRNA	-	-
ENST00000799851.1	LPGAT1-AS1-210	805	No protein	-	lncRNA	-	-
ENST00000799868.1	LPGAT1-AS1-227	790	No protein	-	lncRNA	-	-
ENST00000799858.1	LPGAT1-AS1-217	786	No protein	-	lncRNA	-	-
ENST00000799864.1	LPGAT1-AS1-223	783	No protein	-	lncRNA	-	-
ENST00000799871.1	LPGAT1-AS1-230	783	No protein	-	lncRNA	-	-
ENST00000799854.1	LPGAT1-AS1-213	781	No protein	-	lncRNA	-	-
ENST00000799848.1	LPGAT1-AS1-207	778	No protein	-	lncRNA	-	-
ENST00000799852.1	LPGAT1-AS1-211	731	No protein	-	lncRNA	-	-
ENST00000799850.1	LPGAT1-AS1-209	730	No protein	-	lncRNA	-	-
ENST00000457272.5	LPGAT1-AS1-204	706	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000429499.7	LPGAT1-AS1-201	700	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000446560.2	LPGAT1-AS1-203	696	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000799857.1	LPGAT1-AS1-216	689	No protein	-	lncRNA	-	-
ENST00000799855.1	LPGAT1-AS1-214	675	No protein	-	lncRNA	-	-
ENST00000799869.1	LPGAT1-AS1-228	672	No protein	-	lncRNA	-	-
ENST00000799865.1	LPGAT1-AS1-224	650	No protein	-	lncRNA	-	-
ENST00000799870.1	LPGAT1-AS1-229	629	No protein	-	lncRNA	-	-
ENST00000799853.1	LPGAT1-AS1-212	624	No protein	-	lncRNA	-	-
ENST00000799872.1	LPGAT1-AS1-231	593	No protein	-	lncRNA	-	-
ENST00000430623.5	LPGAT1-AS1-202	545	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000799856.1	LPGAT1-AS1-215	528	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 545 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000430623.5

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000430623.5 LPGAT1-AS1-202

Summary

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Transcript: ENST00000430623.5 LPGAT1-AS1-202

Summary

About Us

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