Transcript: ENST00000441691.1 LINC01005-201

Description

long intergenic non-protein coding RNA 1005 [Source:HGNC Symbol;Acc:HGNC:48963]

Location

Chromosome 7: 64,027,852-64,028,774 reverse strand.

About this transcript

This transcript has 3 exons and maps to 97 oligo probes.

Gene

This transcript is a product of gene ENSG00000228564.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000753136.1	LINC01005-207	988	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000649157.1	LINC01005-205	2900	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000647881.1	LINC01005-204	1735	No protein	-	lncRNA	-	-
ENST00000753745.1	LINC01005-242	1503	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000753137.1	LINC01005-208	1065	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000657780.1	LINC01005-206	956	No protein	-	lncRNA	-	-
ENST00000753738.1	LINC01005-235	946	No protein	-	lncRNA	-	-
ENST00000753138.1	LINC01005-209	929	No protein	-	lncRNA	-	-
ENST00000753739.1	LINC01005-236	816	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000753731.1	LINC01005-228	774	No protein	-	lncRNA	-	-
ENST00000639687.1	LINC01005-203	773	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000753900.1	LINC01005-254	770	No protein	-	lncRNA	-	-
ENST00000753735.1	LINC01005-232	762	No protein	-	lncRNA	-	-
ENST00000753736.1	LINC01005-233	717	No protein	-	lncRNA	-	-
ENST00000753748.1	LINC01005-245	706	No protein	-	lncRNA	-	-
ENST00000753734.1	LINC01005-231	685	No protein	-	lncRNA	-	-
ENST00000753742.1	LINC01005-239	679	No protein	-	lncRNA	-	-
ENST00000753747.1	LINC01005-244	677	No protein	-	lncRNA	-	-
ENST00000753153.1	LINC01005-224	674	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000753142.1	LINC01005-213	661	No protein	-	lncRNA	-	-
ENST00000753154.1	LINC01005-225	629	No protein	-	lncRNA	-	-
ENST00000753895.1	LINC01005-249	620	No protein	-	lncRNA	-	-
ENST00000753746.1	LINC01005-243	616	No protein	-	lncRNA	-	-
ENST00000753151.1	LINC01005-222	615	No protein	-	lncRNA	-	-
ENST00000753898.1	LINC01005-252	608	No protein	-	lncRNA	-	-
ENST00000753901.1	LINC01005-255	596	No protein	-	lncRNA	-	-
ENST00000753741.1	LINC01005-238	579	No protein	-	lncRNA	-	-
ENST00000753897.1	LINC01005-251	577	No protein	-	lncRNA	-	-
ENST00000753152.1	LINC01005-223	563	No protein	-	lncRNA	-	-
ENST00000753147.1	LINC01005-218	562	No protein	-	lncRNA	-	-
ENST00000753730.1	LINC01005-227	555	No protein	-	lncRNA	-	-
ENST00000753903.1	LINC01005-257	549	No protein	-	lncRNA	-	-
ENST00000753729.1	LINC01005-226	547	No protein	-	lncRNA	-	-
ENST00000753733.1	LINC01005-230	543	No protein	-	lncRNA	-	-
ENST00000441691.1	LINC01005-201	540	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000753899.1	LINC01005-253	537	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000451440.1	LINC01005-202	531	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000753732.1	LINC01005-229	526	No protein	-	lncRNA	-	-
ENST00000753145.1	LINC01005-216	512	No protein	-	lncRNA	-	-
ENST00000753737.1	LINC01005-234	498	No protein	-	lncRNA	-	-
ENST00000753743.1	LINC01005-240	488	No protein	-	lncRNA	-	-
ENST00000753744.1	LINC01005-241	486	No protein	-	lncRNA	-	-
ENST00000753896.1	LINC01005-250	482	No protein	-	lncRNA	-	-
ENST00000753140.1	LINC01005-211	482	No protein	-	lncRNA	-	-
ENST00000753141.1	LINC01005-212	477	No protein	-	lncRNA	-	-
ENST00000753148.1	LINC01005-219	472	No protein	-	lncRNA	-	-
ENST00000753149.1	LINC01005-220	468	No protein	-	lncRNA	-	-
ENST00000753902.1	LINC01005-256	462	No protein	-	lncRNA	-	-
ENST00000753139.1	LINC01005-210	448	No protein	-	lncRNA	-	-
ENST00000753740.1	LINC01005-237	442	No protein	-	lncRNA	-	-
ENST00000753150.1	LINC01005-221	427	No protein	-	lncRNA	-	-
ENST00000753144.1	LINC01005-215	426	No protein	-	lncRNA	-	-
ENST00000753146.1	LINC01005-217	424	No protein	-	lncRNA	-	-
ENST00000753143.1	LINC01005-214	411	No protein	-	lncRNA	-	-
ENST00000753749.1	LINC01005-246	350	No protein	-	lncRNA	-	-
ENST00000753751.1	LINC01005-248	349	No protein	-	lncRNA	-	-
ENST00000753750.1	LINC01005-247	348	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 540 bps,

Transcript Support Level (TSL)

TSL:4

Version

ENST00000441691.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000441691.1 LINC01005-201

Summary

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Transcript: ENST00000441691.1 LINC01005-201

Summary

About Us

Get help

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