Transcript: ENST00000660801.2 LINC00578-208

Description

long intergenic non-protein coding RNA 578 [Source:HGNC Symbol;Acc:HGNC:43807]

Location

Chromosome 3: 177,722,012-177,752,721 forward strand.

About this transcript

This transcript has 2 exons and maps to 73 oligo probes.

Gene

This transcript is a product of gene ENSG00000228221.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000656037.1	LINC00578-206	1355	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668730.1	LINC00578-212	3189	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000850251.1	LINC00578-243	1932	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661450.1	LINC00578-210	1462	No protein	-	lncRNA	-	-
ENST00000657906.1	LINC00578-207	1387	No protein	-	lncRNA	-	-
ENST00000850232.1	LINC00578-224	1336	No protein	-	lncRNA	-	-
ENST00000671331.2	LINC00578-213	1270	No protein	-	lncRNA	-	-
ENST00000665837.1	LINC00578-211	1262	No protein	-	lncRNA	-	-
ENST00000442937.6	LINC00578-203	1239	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000850224.1	LINC00578-216	1155	No protein	-	lncRNA	-	-
ENST00000446548.2	LINC00578-205	1095	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000660801.2	LINC00578-208	1084	No protein	-	lncRNA	-	-
ENST00000850235.1	LINC00578-227	1046	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000850228.1	LINC00578-220	1029	No protein	-	lncRNA	-	-
ENST00000850223.1	LINC00578-215	1020	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000850225.1	LINC00578-217	1020	No protein	-	lncRNA	-	-
ENST00000716286.1	LINC00578-214	983	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000850234.1	LINC00578-226	981	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000850239.1	LINC00578-231	981	No protein	-	lncRNA	-	-
ENST00000850226.1	LINC00578-218	965	No protein	-	lncRNA	-	-
ENST00000850240.1	LINC00578-232	955	No protein	-	lncRNA	-	-
ENST00000850230.1	LINC00578-222	949	No protein	-	lncRNA	-	-
ENST00000850229.1	LINC00578-221	943	No protein	-	lncRNA	-	-
ENST00000850233.1	LINC00578-225	926	No protein	-	lncRNA	-	-
ENST00000850242.1	LINC00578-234	897	No protein	-	lncRNA	-	-
ENST00000661409.1	LINC00578-209	876	No protein	-	lncRNA	-	-
ENST00000850244.1	LINC00578-236	853	No protein	-	lncRNA	-	-
ENST00000850238.1	LINC00578-230	848	No protein	-	lncRNA	-	-
ENST00000850259.1	LINC00578-251	838	No protein	-	lncRNA	-	-
ENST00000850236.1	LINC00578-228	820	No protein	-	lncRNA	-	-
ENST00000850258.1	LINC00578-250	813	No protein	-	lncRNA	-	-
ENST00000850243.1	LINC00578-235	805	No protein	-	lncRNA	-	-
ENST00000850227.1	LINC00578-219	774	No protein	-	lncRNA	-	-
ENST00000850254.1	LINC00578-246	760	No protein	-	lncRNA	-	-
ENST00000850231.1	LINC00578-223	746	No protein	-	lncRNA	-	-
ENST00000850248.1	LINC00578-240	715	No protein	-	lncRNA	-	-
ENST00000850252.1	LINC00578-244	701	No protein	-	lncRNA	-	-
ENST00000850245.1	LINC00578-237	661	No protein	-	lncRNA	-	-
ENST00000850247.1	LINC00578-239	661	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000850241.1	LINC00578-233	638	No protein	-	lncRNA	-	-
ENST00000850253.1	LINC00578-245	622	No protein	-	lncRNA	-	-
ENST00000850250.1	LINC00578-242	613	No protein	-	lncRNA	-	-
ENST00000423466.2	LINC00578-201	587	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000850249.1	LINC00578-241	562	No protein	-	lncRNA	-	-
ENST00000850255.1	LINC00578-247	553	No protein	-	lncRNA	-	-
ENST00000439009.1	LINC00578-202	542	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000850257.1	LINC00578-249	510	No protein	-	lncRNA	-	-
ENST00000850256.1	LINC00578-248	506	No protein	-	lncRNA	-	-
ENST00000445673.1	LINC00578-204	437	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000850246.1	LINC00578-238	419	No protein	-	lncRNA	-	-
ENST00000850237.1	LINC00578-229	321	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 1,084 bps,

Version

ENST00000660801.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000660801.2 LINC00578-208

Summary

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Transcript: ENST00000660801.2 LINC00578-208

Summary

About Us

Get help

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