Transcript: ENST00000668303.1 LINC02542-210

Description

long intergenic non-protein coding RNA 2542 [Source:HGNC Symbol;Acc:HGNC:53576]

Location

Chromosome 6: 81,844,604-82,160,755 reverse strand.

About this transcript

This transcript has 3 exons and maps to 144 oligo probes.

Gene

This transcript is a product of gene ENSG00000226453.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000663543.1	LINC02542-205	1662	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000821209.1	LINC02542-213	2385	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000702318.2	LINC02542-212	2366	No protein	-	lncRNA	-	-
ENST00000665153.2	LINC02542-206	1671	No protein	-	lncRNA	-	-
ENST00000668266.1	LINC02542-209	1606	No protein	-	lncRNA	-	-
ENST00000666226.1	LINC02542-207	1583	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000667666.1	LINC02542-208	1564	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000660637.1	LINC02542-204	1529	No protein	-	lncRNA	-	-
ENST00000658218.1	LINC02542-202	1510	No protein	-	lncRNA	-	-
ENST00000418567.2	LINC02542-201	1501	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000668303.1	LINC02542-210	1498	No protein	-	lncRNA	-	-
ENST00000660534.3	LINC02542-203	1491	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000821215.1	LINC02542-219	1206	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000821222.1	LINC02542-226	913	No protein	-	lncRNA	-	-
ENST00000821214.1	LINC02542-218	689	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000821212.1	LINC02542-216	618	No protein	-	lncRNA	-	-
ENST00000684960.3	LINC02542-211	576	No protein	-	lncRNA	-	-
ENST00000821221.1	LINC02542-225	558	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000821211.1	LINC02542-215	492	No protein	-	lncRNA	-	-
ENST00000821216.1	LINC02542-220	463	No protein	-	lncRNA	-	-
ENST00000821219.1	LINC02542-223	458	No protein	-	lncRNA	-	-
ENST00000821217.1	LINC02542-221	356	No protein	-	lncRNA	-	-
ENST00000821220.1	LINC02542-224	351	No protein	-	lncRNA	-	-
ENST00000821218.1	LINC02542-222	349	No protein	-	lncRNA	-	-
ENST00000821210.1	LINC02542-214	309	No protein	-	lncRNA	-	-
ENST00000821213.1	LINC02542-217	294	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,498 bps,

Version

ENST00000668303.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000668303.1 LINC02542-210

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Transcript: ENST00000668303.1 LINC02542-210

Summary

About Us

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