Transcript: ENST00000426282.7 NUP50-DT-201

Description

NUP50 divergent transcript [Source:HGNC Symbol;Acc:HGNC:50502]

Gene Synonyms

NUP50-AS1

Location

Chromosome 22: 45,133,020-45,163,800 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 14404 variant alleles and maps to 254 oligo probes.

Gene

This transcript is a product of gene ENSG00000226328.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000426282.7	NUP50-DT-201	2095	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000665704.1	NUP50-DT-204	2031	No protein	-	lncRNA	-	-
ENST00000609284.3	NUP50-DT-203	1698	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000816418.1	NUP50-DT-206	1479	No protein	-	lncRNA	-	-
ENST00000816421.1	NUP50-DT-209	1031	No protein	-	lncRNA	-	-
ENST00000816424.1	NUP50-DT-212	1005	No protein	-	lncRNA	-	-
ENST00000816425.1	NUP50-DT-213	959	No protein	-	lncRNA	-	-
ENST00000816426.1	NUP50-DT-214	926	No protein	-	lncRNA	-	-
ENST00000816420.1	NUP50-DT-208	923	No protein	-	lncRNA	-	-
ENST00000816427.1	NUP50-DT-215	902	No protein	-	lncRNA	-	-
ENST00000816422.1	NUP50-DT-210	847	No protein	-	lncRNA	-	-
ENST00000702308.2	NUP50-DT-205	803	No protein	-	lncRNA	-	-
ENST00000816419.1	NUP50-DT-207	797	No protein	-	lncRNA	-	-
ENST00000816428.1	NUP50-DT-216	712	No protein	-	lncRNA	-	-
ENST00000816429.1	NUP50-DT-217	700	No protein	-	lncRNA	-	-
ENST00000816423.1	NUP50-DT-211	653	No protein	-	lncRNA	-	-
ENST00000432502.1	NUP50-DT-202	596	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000816430.1	NUP50-DT-218	487	No protein	-	lncRNA	-	-
ENST00000816431.1	NUP50-DT-219	412	No protein	-	lncRNA	-	-
ENST00000816432.1	NUP50-DT-220	387	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 2,095 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000426282.7

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000426282.7 NUP50-DT-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000426282.7 NUP50-DT-201

Summary

About Us

Get help

Our sister sites

Follow us