Transcript: ENST00000661007.1 LINC00240-209

Description

long intergenic non-protein coding RNA 240 [Source:HGNC Symbol;Acc:HGNC:18772]

Gene Synonyms

BA373D17.1, C6ORF41, NCRNA00240

Location

Chromosome 6: 27,020,351-27,023,923 forward strand.

About this transcript

This transcript has 4 exons and maps to 225 oligo probes.

Gene

This transcript is a product of gene ENSG00000224843.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000724049.1	LINC00240-218	469	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000607607.5	LINC00240-204	5607	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000664092.1	LINC00240-212	1418	No protein	-	lncRNA	-	-
ENST00000659035.2	LINC00240-207	1147	No protein	-	lncRNA	-	-
ENST00000660952.2	LINC00240-208	1107	No protein	-	lncRNA	-	-
ENST00000654448.1	LINC00240-206	1106	No protein	-	lncRNA	-	-
ENST00000666341.1	LINC00240-214	1062	No protein	-	lncRNA	-	-
ENST00000669756.1	LINC00240-216	1023	No protein	-	lncRNA	-	-
ENST00000652085.1	LINC00240-205	999	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668297.1	LINC00240-215	985	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000662403.2	LINC00240-211	980	No protein	-	lncRNA	-	-
ENST00000606878.3	LINC00240-203	975	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000664178.1	LINC00240-213	940	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000724062.1	LINC00240-231	865	No protein	-	lncRNA	-	-
ENST00000724053.1	LINC00240-222	744	No protein	-	lncRNA	-	-
ENST00000724063.1	LINC00240-232	702	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000724057.1	LINC00240-226	699	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661007.1	LINC00240-209	684	No protein	-	lncRNA	-	-
ENST00000724066.1	LINC00240-235	684	No protein	-	lncRNA	-	-
ENST00000724052.1	LINC00240-221	679	No protein	-	lncRNA	-	-
ENST00000724068.1	LINC00240-237	669	No protein	-	lncRNA	-	-
ENST00000724055.1	LINC00240-224	666	No protein	-	lncRNA	-	-
ENST00000724067.1	LINC00240-236	652	No protein	-	lncRNA	-	-
ENST00000724051.1	LINC00240-220	618	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661575.1	LINC00240-210	566	No protein	-	lncRNA	-	-
ENST00000724058.1	LINC00240-227	561	No protein	-	lncRNA	-	-
ENST00000724054.1	LINC00240-223	542	No protein	-	lncRNA	-	-
ENST00000420081.3	LINC00240-201	527	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000724065.1	LINC00240-234	503	No protein	-	lncRNA	-	-
ENST00000424968.6	LINC00240-202	495	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000724056.1	LINC00240-225	495	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000724050.1	LINC00240-219	486	No protein	-	lncRNA	-	-
ENST00000724060.1	LINC00240-229	480	No protein	-	lncRNA	-	-
ENST00000724059.1	LINC00240-228	474	No protein	-	lncRNA	-	-
ENST00000724064.1	LINC00240-233	470	No protein	-	lncRNA	-	-
ENST00000724061.1	LINC00240-230	448	No protein	-	lncRNA	-	-
ENST00000670365.1	LINC00240-217	344	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 684 bps,

Version

ENST00000661007.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000661007.1 LINC00240-209

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000661007.1 LINC00240-209

Summary

About Us

Get help

Our sister sites

Follow us