Transcript: ENST00000667386.1 LINC00887-218

Description

long intergenic non-protein coding RNA 887 [Source:HGNC Symbol;Acc:HGNC:48574]

Gene Synonyms

ACLY-BP, HEIRCC, LINC-ATP13A4-8

Location

Chromosome 3: 194,202,392-194,250,203 reverse strand.

About this transcript

This transcript has 3 exons and maps to 198 oligo probes.

Gene

This transcript is a product of gene ENSG00000214145.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000715829.1	LINC00887-223	4301	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000414120.1	LINC00887-202	2880	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000794681.1	LINC00887-241	1795	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000429578.5	LINC00887-204	1717	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000667386.1	LINC00887-218	1584	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000794684.1	LINC00887-244	1562	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000415869.7	LINC00887-203	1549	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000654010.1	LINC00887-208	1488	No protein	-	lncRNA	-	-
ENST00000794670.1	LINC00887-230	1450	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000794664.1	LINC00887-224	1439	No protein	-	lncRNA	-	-
ENST00000794682.1	LINC00887-242	1431	No protein	-	lncRNA	-	-
ENST00000670716.2	LINC00887-220	1253	No protein	-	lncRNA	-	-
ENST00000794669.1	LINC00887-229	1216	No protein	-	lncRNA	-	-
ENST00000794671.1	LINC00887-231	1204	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000432908.2	LINC00887-205	1185	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000662346.1	LINC00887-214	1172	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670959.1	LINC00887-221	1170	No protein	-	lncRNA	-	-
ENST00000653788.1	LINC00887-207	1164	No protein	-	lncRNA	-	-
ENST00000794668.1	LINC00887-228	1117	No protein	-	lncRNA	-	-
ENST00000662552.1	LINC00887-215	1104	No protein	-	lncRNA	-	-
ENST00000794673.1	LINC00887-233	1097	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000657249.2	LINC00887-210	1080	No protein	-	lncRNA	-	-
ENST00000664894.2	LINC00887-216	1069	No protein	-	lncRNA	-	-
ENST00000794666.1	LINC00887-226	1061	No protein	-	lncRNA	-	-
ENST00000794675.1	LINC00887-235	1046	No protein	-	lncRNA	-	-
ENST00000686489.2	LINC00887-222	1008	No protein	-	lncRNA	-	-
ENST00000666638.1	LINC00887-217	990	No protein	-	lncRNA	-	-
ENST00000794667.1	LINC00887-227	982	No protein	-	lncRNA	-	-
ENST00000456816.7	LINC00887-206	975	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000794672.1	LINC00887-232	974	No protein	-	lncRNA	-	-
ENST00000660996.1	LINC00887-213	951	No protein	-	lncRNA	-	-
ENST00000794677.1	LINC00887-237	934	No protein	-	lncRNA	-	-
ENST00000654752.1	LINC00887-209	931	No protein	-	lncRNA	-	-
ENST00000658228.2	LINC00887-211	922	No protein	-	lncRNA	-	-
ENST00000659219.1	LINC00887-212	876	No protein	-	lncRNA	-	-
ENST00000794679.1	LINC00887-239	870	No protein	-	lncRNA	-	-
ENST00000794674.1	LINC00887-234	849	No protein	-	lncRNA	-	-
ENST00000794678.1	LINC00887-238	840	No protein	-	lncRNA	-	-
ENST00000794686.1	LINC00887-245	840	No protein	-	lncRNA	-	-
ENST00000794687.1	LINC00887-246	820	No protein	-	lncRNA	-	-
ENST00000794683.1	LINC00887-243	814	No protein	-	lncRNA	-	-
ENST00000794688.1	LINC00887-247	814	No protein	-	lncRNA	-	-
ENST00000794676.1	LINC00887-236	626	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000794680.1	LINC00887-240	608	No protein	-	lncRNA	-	-
ENST00000669998.2	LINC00887-219	585	No protein	-	lncRNA	-	-
ENST00000794689.1	LINC00887-248	468	No protein	-	lncRNA	-	-
ENST00000794665.1	LINC00887-225	454	No protein	-	lncRNA	-	-
ENST00000397644.2	LINC00887-201	416	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,584 bps,

Version

ENST00000667386.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000667386.1 LINC00887-218

Summary

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Transcript: ENST00000667386.1 LINC00887-218

Summary

About Us

Get help

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