Transcript: ENST00000670730.1 PRDM16-DT-209

Description

PRDM16 divergent transcript [Source:HGNC Symbol;Acc:HGNC:48664]

Gene Synonyms

FLJ42875, LINC00982, LNC-DPRDM16

Location

Chromosome 1: 3,059,638-3,062,742 reverse strand.

About this transcript

This transcript has 2 exons and maps to 493 oligo probes.

Gene

This transcript is a product of gene ENSG00000177133.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000818092.1	PRDM16-DT-212	584	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000445317.1	PRDM16-DT-205	4247	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000606861.1	PRDM16-DT-207	2917	No protein	-	lncRNA	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000670730.1	PRDM16-DT-209	2282	No protein	-	lncRNA	-	-
ENST00000321399.8	PRDM16-DT-202	2230	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000453118.5	PRDM16-DT-206	1697	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000818117.1	PRDM16-DT-237	1594	No protein	-	lncRNA	-	-
ENST00000818107.1	PRDM16-DT-227	1542	No protein	-	lncRNA	-	-
ENST00000818099.1	PRDM16-DT-219	1540	No protein	-	lncRNA	-	-
ENST00000667159.1	PRDM16-DT-208	1275	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000818106.1	PRDM16-DT-226	1244	No protein	-	lncRNA	-	-
ENST00000321336.2	PRDM16-DT-201	1243	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000818098.1	PRDM16-DT-218	1217	No protein	-	lncRNA	-	-
ENST00000818097.1	PRDM16-DT-217	1209	No protein	-	lncRNA	-	-
ENST00000818096.1	PRDM16-DT-216	1192	No protein	-	lncRNA	-	-
ENST00000413472.6	PRDM16-DT-203	1011	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000818112.1	PRDM16-DT-232	989	No protein	-	lncRNA	-	-
ENST00000818116.1	PRDM16-DT-236	899	No protein	-	lncRNA	-	-
ENST00000818114.1	PRDM16-DT-234	825	No protein	-	lncRNA	-	-
ENST00000818115.1	PRDM16-DT-235	801	No protein	-	lncRNA	-	-
ENST00000818105.1	PRDM16-DT-225	748	No protein	-	lncRNA	-	-
ENST00000687743.2	PRDM16-DT-210	742	No protein	-	lncRNA	-	-
ENST00000818120.1	PRDM16-DT-240	721	No protein	-	lncRNA	-	-
ENST00000818100.1	PRDM16-DT-220	719	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000818102.1	PRDM16-DT-222	716	No protein	-	lncRNA	-	-
ENST00000818103.1	PRDM16-DT-223	715	No protein	-	lncRNA	-	-
ENST00000702683.2	PRDM16-DT-211	676	No protein	-	lncRNA	-	-
ENST00000818094.1	PRDM16-DT-214	658	No protein	-	lncRNA	-	-
ENST00000818093.1	PRDM16-DT-213	638	No protein	-	lncRNA	-	-
ENST00000818101.1	PRDM16-DT-221	572	No protein	-	lncRNA	-	-
ENST00000818113.1	PRDM16-DT-233	568	No protein	-	lncRNA	-	-
ENST00000818095.1	PRDM16-DT-215	543	No protein	-	lncRNA	-	-
ENST00000818110.1	PRDM16-DT-230	509	No protein	-	lncRNA	-	-
ENST00000818108.1	PRDM16-DT-228	479	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000818104.1	PRDM16-DT-224	448	No protein	-	lncRNA	-	-
ENST00000818111.1	PRDM16-DT-231	403	No protein	-	lncRNA	-	-
ENST00000818119.1	PRDM16-DT-239	396	No protein	-	lncRNA	-	-
ENST00000818118.1	PRDM16-DT-238	349	No protein	-	lncRNA	-	-
ENST00000818109.1	PRDM16-DT-229	327	No protein	-	lncRNA	-	-
ENST00000415573.1	PRDM16-DT-204	280	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 2,282 bps,

Version

ENST00000670730.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000670730.1 PRDM16-DT-209

Summary

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Transcript: ENST00000670730.1 PRDM16-DT-209

Summary

About Us

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