Transcript: ENST00000654054.1 LINC00905-208

Description

long intergenic non-protein coding RNA 905 [Source:HGNC Symbol;Acc:HGNC:26334]

Gene Synonyms

FLJ25328

Location

Chromosome 19: 16,031,497-16,036,535 forward strand.

About this transcript

This transcript has 4 exons and maps to 490 oligo probes.

Gene

This transcript is a product of gene ENSG00000167459.18 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000589071.4	LINC00905-204	1161	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000715794.1	LINC00905-239	1203	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000662052.1	LINC00905-223	1890	No protein	-	lncRNA	-	-
ENST00000658675.2	LINC00905-218	1737	No protein	-	lncRNA	-	-
ENST00000588117.8	LINC00905-202	1720	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000664035.1	LINC00905-229	1685	No protein	-	lncRNA	-	-
ENST00000737019.1	LINC00905-244	1679	No protein	-	lncRNA	-	-
ENST00000662251.2	LINC00905-225	1661	No protein	-	lncRNA	-	-
ENST00000656142.1	LINC00905-214	1656	No protein	-	lncRNA	-	-
ENST00000671363.1	LINC00905-238	1644	No protein	-	lncRNA	-	-
ENST00000657571.1	LINC00905-215	1569	No protein	-	lncRNA	-	-
ENST00000654054.1	LINC00905-208	1548	No protein	-	lncRNA	-	-
ENST00000659441.1	LINC00905-219	1548	No protein	-	lncRNA	-	-
ENST00000655400.1	LINC00905-213	1548	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000602744.2	LINC00905-206	1541	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000658008.1	LINC00905-216	1516	No protein	-	lncRNA	-	-
ENST00000669042.1	LINC00905-235	1494	No protein	-	lncRNA	-	-
ENST00000665134.1	LINC00905-231	1482	No protein	-	lncRNA	-	-
ENST00000668027.1	LINC00905-234	1479	No protein	-	lncRNA	-	-
ENST00000654066.1	LINC00905-209	1439	No protein	-	lncRNA	-	-
ENST00000666507.1	LINC00905-232	1435	No protein	-	lncRNA	-	-
ENST00000669964.1	LINC00905-237	1425	No protein	-	lncRNA	-	-
ENST00000588838.6	LINC00905-203	1414	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000654675.1	LINC00905-211	1402	No protein	-	lncRNA	-	-
ENST00000662714.1	LINC00905-227	1397	No protein	-	lncRNA	-	-
ENST00000661797.1	LINC00905-221	1392	No protein	-	lncRNA	-	-
ENST00000715795.1	LINC00905-240	1383	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658373.1	LINC00905-217	1352	No protein	-	lncRNA	-	-
ENST00000662860.1	LINC00905-228	1259	No protein	-	lncRNA	-	-
ENST00000654929.1	LINC00905-212	1237	No protein	-	lncRNA	-	-
ENST00000659686.1	LINC00905-220	1233	No protein	-	lncRNA	-	-
ENST00000669672.1	LINC00905-236	1212	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000662221.2	LINC00905-224	1127	No protein	-	lncRNA	-	-
ENST00000664254.1	LINC00905-230	1110	No protein	-	lncRNA	-	-
ENST00000667744.1	LINC00905-233	1064	No protein	-	lncRNA	-	-
ENST00000662482.1	LINC00905-226	1031	No protein	-	lncRNA	-	-
ENST00000662032.2	LINC00905-222	881	No protein	-	lncRNA	-	-
ENST00000654208.1	LINC00905-210	811	No protein	-	lncRNA	-	-
ENST00000737020.1	LINC00905-245	696	No protein	-	lncRNA	-	-
ENST00000602372.1	LINC00905-205	545	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000715804.1	LINC00905-243	534	No protein	-	lncRNA	-	-
ENST00000737021.1	LINC00905-246	532	No protein	-	lncRNA	-	-
ENST00000397365.7	LINC00905-201	466	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000602814.1	LINC00905-207	465	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000715803.1	LINC00905-242	463	No protein	-	lncRNA	-	-
ENST00000737023.1	LINC00905-248	431	No protein	-	lncRNA	-	-
ENST00000737022.1	LINC00905-247	418	No protein	-	lncRNA	-	-
ENST00000715802.1	LINC00905-241	304	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,548 bps,

Version

ENST00000654054.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000654054.1 LINC00905-208

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Transcript: ENST00000654054.1 LINC00905-208

Summary

About Us

Get help

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