Transcript: ENST00000642324.1 PTCHD3-201

Description

patched domain containing 3 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:24776]

Gene Synonyms

FLJ44037, PTR

Location

About this transcript

This transcript has 4 exons, is associated with 8852 variant alleles and maps to 260 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000642324.1	PTCHD3-201	3595	954aa	ENSP00000495205.1	Protein coding LoF		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 3,595 bps, Translation length: 954 residues

Version

ENST00000642324.1

Type

Protein coding LoF

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.