Description

thrombopoietin [Source:HGNC Symbol;Acc:HGNC:11795]

Synonyms

MGDF, MPLLG, TPO

About this transcript

This transcript has 6 exons, is annotated with 13 domains and features, is associated with 115 variations and maps to 18 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
THPO-001ENST000002046151855353aaENSP00000204615
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS3265P40225 NM_000460
NM_001290028
NP_000451
NP_001276927
NP_001276957
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI3APPRIS candidate principal isoform (earliest CCDS)
Glossary entry for APPRIS
APPRIS website
THPO-002ENST000004456961505349aaENSP00000410763
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS54693P40225 NM_001177597
NM_001177598
NP_001171068
NP_001171069
NP_001276951
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
THPO-003ENST000004214421132286aaENSP00000411704
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8W6L1 NP_001276926
NP_001276956
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
THPO-004ENST00000477594248No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 6 Coding exons: 5 Transcript length: 1,855 bps Translation length: 353 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS3265

Uniprot

This transcript corresponds to the following Uniprot identifiers: P40225

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000204615.10

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays