Transcript: ENST00000621716.2 SLC6A3-209

Description

solute carrier family 6 member 3 [Source:HGNC Symbol;Acc:HGNC:11049]

Gene Synonyms

DAT, DAT1

Location

Scaffold HSCHR5_3_CTG1: 64,343-121,219 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 67 domains and features, is associated with 35378 variant alleles and maps to 658 oligo probes.

Gene

This transcript is a product of gene ENSG00000276996.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq Match	Flags
ENST00000621716.2	SLC6A3-209	3936	620aa	ENSP00000479597.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q01959	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000630314.1	SLC6A3-211	950	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000626610.1	SLC6A3-210	556	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 3,936 bps, Translation length: 620 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q01959

Transcript Support Level (TSL)

TSL:1

Version

ENST00000621716.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

QC splicing correct [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000621716.2 SLC6A3-209

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Transcript: ENST00000621716.2 SLC6A3-209

Summary

About Us

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