Transcript: ENST00000580972.2 RNU4ATAC-201

Description

RNA, U4atac small nuclear [Source:HGNC Symbol;Acc:HGNC:34016]

Gene Synonyms

RNU4ATAC1, U4ATAC

Location

Chromosome 2: 121,530,880-121,531,009 forward strand.

About this transcript

This transcript has 1 exon, is associated with 423 variant alleles and maps to 87 oligo probes.

Gene

This transcript is a product of gene ENSG00000264229.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000580972.2	RNU4ATAC-201	130	No protein	-	Small RNA molecules that are found in the cell nucleus and are involved in the processing of pre messenger RNAssnRNA		NR_023343.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 1, Coding exons: 0, Transcript length: 130 bps,

MANE

This MANE Select transcript has no translation and matches to NR_023343.3

Transcript Support Level (TSL)

TSL:NA

Version

ENST00000580972.2

Type

SnRNA

Annotation Method

Non-coding RNAs (ncRNAs) predicted using sequences from RFAM and miRBase. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000580972.2 RNU4ATAC-201

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Transcript: ENST00000580972.2 RNU4ATAC-201

Summary

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