Transcript: ENST00000565633.1 SNAI3-AS1-203

Description

SNAI3 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:28327]

Gene Synonyms

MGC23284

Location

Chromosome 16: 88,663,335-88,673,647 forward strand.

About this transcript

This transcript has 4 exons and maps to 143 oligo probes.

Gene

This transcript is a product of gene ENSG00000260630.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000563261.7	SNAI3-AS1-201	1094	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000847150.1	SNAI3-AS1-228	2879	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000669434.2	SNAI3-AS1-211	2451	No protein	-	lncRNA	-	-
ENST00000661622.1	SNAI3-AS1-208	2277	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000567997.3	SNAI3-AS1-204	2157	No protein	-	lncRNA	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000568633.1	SNAI3-AS1-205	2096	No protein	-	lncRNA	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000663493.1	SNAI3-AS1-210	2065	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000563475.2	SNAI3-AS1-202	2025	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000654033.1	SNAI3-AS1-207	1828	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000847152.1	SNAI3-AS1-230	1435	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000693611.3	SNAI3-AS1-217	1381	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000847151.1	SNAI3-AS1-229	1296	No protein	-	lncRNA	-	-
ENST00000692040.2	SNAI3-AS1-215	1287	No protein	-	lncRNA	-	-
ENST00000661704.1	SNAI3-AS1-209	1266	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000847153.1	SNAI3-AS1-231	1265	No protein	-	lncRNA	-	-
ENST00000847149.1	SNAI3-AS1-227	1240	No protein	-	lncRNA	-	-
ENST00000569786.7	SNAI3-AS1-206	1147	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000847144.1	SNAI3-AS1-222	1128	No protein	-	lncRNA	-	-
ENST00000690987.2	SNAI3-AS1-213	1124	No protein	-	lncRNA	-	-
ENST00000693195.1	SNAI3-AS1-216	1076	No protein	-	lncRNA	-	-
ENST00000847147.1	SNAI3-AS1-225	1047	No protein	-	lncRNA	-	-
ENST00000847148.1	SNAI3-AS1-226	1025	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000847143.1	SNAI3-AS1-221	1006	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000847146.1	SNAI3-AS1-224	994	No protein	-	lncRNA	-	-
ENST00000702003.2	SNAI3-AS1-219	919	No protein	-	lncRNA	-	-
ENST00000847156.1	SNAI3-AS1-234	877	No protein	-	lncRNA	-	-
ENST00000687428.2	SNAI3-AS1-212	859	No protein	-	lncRNA	-	-
ENST00000565633.1	SNAI3-AS1-203	829	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000700805.1	SNAI3-AS1-218	819	No protein	-	lncRNA	-	-
ENST00000847142.1	SNAI3-AS1-220	758	No protein	-	lncRNA	-	-
ENST00000847154.1	SNAI3-AS1-232	721	No protein	-	lncRNA	-	-
ENST00000847155.1	SNAI3-AS1-233	710	No protein	-	lncRNA	-	-
ENST00000847145.1	SNAI3-AS1-223	645	No protein	-	lncRNA	-	-
ENST00000847158.1	SNAI3-AS1-236	586	No protein	-	lncRNA	-	-
ENST00000691208.3	SNAI3-AS1-214	564	No protein	-	lncRNA	-	-
ENST00000847159.1	SNAI3-AS1-237	545	No protein	-	lncRNA	-	-
ENST00000847157.1	SNAI3-AS1-235	506	No protein	-	lncRNA	-	-
ENST00000847160.1	SNAI3-AS1-238	487	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 829 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENST00000565633.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000565633.1 SNAI3-AS1-203

Summary

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Transcript: ENST00000565633.1 SNAI3-AS1-203

Summary

About Us

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