Transcript: ENST00000559299.2 LINC01418-201

Description

long intergenic non-protein coding RNA 1418 [Source:HGNC Symbol;Acc:HGNC:50711]

Gene Synonyms

AC104041.1

Location

Chromosome 15: 81,816,761-81,995,666 reverse strand.

About this transcript

This transcript has 8 exons and maps to 238 oligo probes.

Gene

This transcript is a product of gene ENSG00000259692.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000559428.2	LINC01418-202	1277	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000559299.2	LINC01418-201	2011	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000668584.2	LINC01418-207	1942	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000657769.1	LINC01418-205	1514	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000829421.1	LINC01418-219	1464	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000829414.1	LINC01418-212	1448	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000829420.1	LINC01418-218	1134	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000829423.1	LINC01418-221	1056	No protein	-	lncRNA	-	-
ENST00000664621.1	LINC01418-206	998	No protein	-	lncRNA	-	-
ENST00000829412.1	LINC01418-210	984	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000829416.1	LINC01418-214	945	No protein	-	lncRNA	-	-
ENST00000829419.1	LINC01418-217	895	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000829433.1	LINC01418-231	807	No protein	-	lncRNA	-	-
ENST00000829418.1	LINC01418-216	790	No protein	-	lncRNA	-	-
ENST00000829411.1	LINC01418-209	756	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000829435.1	LINC01418-233	752	No protein	-	lncRNA	-	-
ENST00000560054.6	LINC01418-203	747	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000829426.1	LINC01418-224	747	No protein	-	lncRNA	-	-
ENST00000829432.1	LINC01418-230	741	No protein	-	lncRNA	-	-
ENST00000829429.1	LINC01418-227	734	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000829410.1	LINC01418-208	730	No protein	-	lncRNA	-	-
ENST00000829422.1	LINC01418-220	724	No protein	-	lncRNA	-	-
ENST00000560097.2	LINC01418-204	701	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000829413.1	LINC01418-211	690	No protein	-	lncRNA	-	-
ENST00000829430.1	LINC01418-228	682	No protein	-	lncRNA	-	-
ENST00000829417.1	LINC01418-215	674	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000829415.1	LINC01418-213	663	No protein	-	lncRNA	-	-
ENST00000829428.1	LINC01418-226	588	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000829436.1	LINC01418-234	587	No protein	-	lncRNA	-	-
ENST00000829427.1	LINC01418-225	554	No protein	-	lncRNA	-	-
ENST00000829434.1	LINC01418-232	542	No protein	-	lncRNA	-	-
ENST00000829425.1	LINC01418-223	507	No protein	-	lncRNA	-	-
ENST00000829431.1	LINC01418-229	469	No protein	-	lncRNA	-	-
ENST00000829424.1	LINC01418-222	356	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 8, Coding exons: 0, Transcript length: 2,011 bps,

Transcript Support Level (TSL)

TSL:4

Version

ENST00000559299.2

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000559299.2 LINC01418-201

Summary

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Transcript: ENST00000559299.2 LINC01418-201

Summary

About Us

Get help

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