Transcript: ENST00000558388.6 LINC03034-202

Description

long intergenic non-protein coding RNA 3034 [Source:HGNC Symbol;Acc:HGNC:54360]

Location

Chromosome 15: 31,222,767-31,230,838 reverse strand.

About this transcript

This transcript has 4 exons and maps to 291 oligo probes.

Gene

This transcript is a product of gene ENSG00000259772.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000685492.1	LINC03034-206	681	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000701658.2	LINC03034-212	1097	No protein	-	lncRNA	-	-
ENST00000692933.3	LINC03034-209	1053	No protein	-	lncRNA	-	-
ENST00000701679.2	LINC03034-213	1030	No protein	-	lncRNA	-	-
ENST00000558388.6	LINC03034-202	1024	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000724464.1	LINC03034-240	986	No protein	-	lncRNA	-	-
ENST00000724462.1	LINC03034-238	972	No protein	-	lncRNA	-	-
ENST00000724449.1	LINC03034-225	968	No protein	-	lncRNA	-	-
ENST00000701759.1	LINC03034-214	966	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000724456.1	LINC03034-232	963	No protein	-	lncRNA	-	-
ENST00000686309.2	LINC03034-208	956	No protein	-	lncRNA	-	-
ENST00000724452.1	LINC03034-228	920	No protein	-	lncRNA	-	-
ENST00000724446.1	LINC03034-222	910	No protein	-	lncRNA	-	-
ENST00000724448.1	LINC03034-224	906	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000724445.1	LINC03034-221	848	No protein	-	lncRNA	-	-
ENST00000558109.2	LINC03034-201	845	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000724447.1	LINC03034-223	843	No protein	-	lncRNA	-	-
ENST00000701403.2	LINC03034-211	838	No protein	-	lncRNA	-	-
ENST00000685870.1	LINC03034-207	827	No protein	-	lncRNA	-	-
ENST00000724450.1	LINC03034-226	817	No protein	-	lncRNA	-	-
ENST00000724451.1	LINC03034-227	804	No protein	-	lncRNA	-	-
ENST00000724457.1	LINC03034-233	756	No protein	-	lncRNA	-	-
ENST00000559094.1	LINC03034-203	745	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000724453.1	LINC03034-229	739	No protein	-	lncRNA	-	-
ENST00000724454.1	LINC03034-230	739	No protein	-	lncRNA	-	-
ENST00000559853.6	LINC03034-204	706	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000724458.1	LINC03034-234	701	No protein	-	lncRNA	-	-
ENST00000701141.2	LINC03034-210	695	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000560812.5	LINC03034-205	680	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000724439.1	LINC03034-215	597	No protein	-	lncRNA	-	-
ENST00000724459.1	LINC03034-235	597	No protein	-	lncRNA	-	-
ENST00000724441.1	LINC03034-217	596	No protein	-	lncRNA	-	-
ENST00000724455.1	LINC03034-231	591	No protein	-	lncRNA	-	-
ENST00000724460.1	LINC03034-236	550	No protein	-	lncRNA	-	-
ENST00000724461.1	LINC03034-237	527	No protein	-	lncRNA	-	-
ENST00000724442.1	LINC03034-218	521	No protein	-	lncRNA	-	-
ENST00000724440.1	LINC03034-216	507	No protein	-	lncRNA	-	-
ENST00000724463.1	LINC03034-239	428	No protein	-	lncRNA	-	-
ENST00000724443.1	LINC03034-219	423	No protein	-	lncRNA	-	-
ENST00000724444.1	LINC03034-220	401	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,024 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000558388.6

Type

LncRNA

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENST00000558388.6 LINC03034-202

Summary

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Transcript: ENST00000558388.6 LINC03034-202

Summary

About Us

Get help

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