Transcript: ENST00000558097.5 SMAD3-DT-202

Description

SMAD3 divergent transcript [Source:HGNC Symbol;Acc:HGNC:56759]

Location

Chromosome 15: 66,984,108-67,000,990 reverse strand.

About this transcript

This transcript has 4 exons and maps to 212 oligo probes.

Gene

This transcript is a product of gene ENSG00000259347.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000773419.1	SMAD3-DT-212	666	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000636067.1	SMAD3-DT-204	2431	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000665471.1	SMAD3-DT-206	1019	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670149.1	SMAD3-DT-207	979	No protein	-	lncRNA	-	-
ENST00000558071.2	SMAD3-DT-201	903	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000655852.1	SMAD3-DT-205	898	No protein	-	lncRNA	-	-
ENST00000773423.1	SMAD3-DT-216	825	No protein	-	lncRNA	-	-
ENST00000773426.1	SMAD3-DT-219	825	No protein	-	lncRNA	-	-
ENST00000702367.2	SMAD3-DT-211	734	No protein	-	lncRNA	-	-
ENST00000773427.1	SMAD3-DT-220	683	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000773420.1	SMAD3-DT-213	596	No protein	-	lncRNA	-	-
ENST00000773425.1	SMAD3-DT-218	572	No protein	-	lncRNA	-	-
ENST00000558097.5	SMAD3-DT-202	540	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000773430.1	SMAD3-DT-223	536	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000773424.1	SMAD3-DT-217	532	No protein	-	lncRNA	-	-
ENST00000701435.1	SMAD3-DT-209	525	No protein	-	lncRNA	-	-
ENST00000773428.1	SMAD3-DT-221	483	No protein	-	lncRNA	-	-
ENST00000560662.3	SMAD3-DT-203	474	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000773431.1	SMAD3-DT-224	467	No protein	-	lncRNA	-	-
ENST00000773421.1	SMAD3-DT-214	465	No protein	-	lncRNA	-	-
ENST00000692307.3	SMAD3-DT-208	458	No protein	-	lncRNA	-	-
ENST00000773432.1	SMAD3-DT-225	421	No protein	-	lncRNA	-	-
ENST00000773422.1	SMAD3-DT-215	403	No protein	-	lncRNA	-	-
ENST00000773429.1	SMAD3-DT-222	373	No protein	-	lncRNA	-	-
ENST00000702335.2	SMAD3-DT-210	349	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 540 bps,

Transcript Support Level (TSL)

TSL:4

Version

ENST00000558097.5

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

overlaps pseudogene [Definitions]

Transcript: ENST00000558097.5 SMAD3-DT-202

Summary

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Transcript: ENST00000558097.5 SMAD3-DT-202

Summary

About Us

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