Transcript: ENST00000553029.1 LINC02406-201

Description

long intergenic non-protein coding RNA 2406 [Source:HGNC Symbol;Acc:HGNC:53334]

Location

Chromosome 12: 39,087,713-39,092,874 reverse strand.

About this transcript

This transcript has 3 exons and maps to 147 oligo probes.

Gene

This transcript is a product of gene ENSG00000258144.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000662938.2	LINC02406-203	1073	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000749806.1	LINC02406-205	1468	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659930.2	LINC02406-202	1245	No protein	-	lncRNA	-	-
ENST00000668449.2	LINC02406-204	815	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000749807.1	LINC02406-206	613	No protein	-	lncRNA	-	-
ENST00000553029.1	LINC02406-201	546	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000749808.1	LINC02406-207	494	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 546 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000553029.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000553029.1 LINC02406-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000553029.1 LINC02406-201

Summary

About Us

Get help

Our sister sites

Follow us