Transcript: ENST00000549357.2

Description

novel transcript

Location

Chromosome 12: 71,047,402-71,118,569 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 30243 variant alleles and maps to 179 oligo probes.

Gene

This transcript is a product of gene ENSG00000258053.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000549357.2	-	887	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000716233.1	-	3642	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000716230.1	-	1309	No protein	-	lncRNA	-	-
ENST00000716232.1	-	817	No protein	-	lncRNA	-	-
ENST00000716231.1	-	812	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000733254.1	-	686	No protein	-	lncRNA	-	-
ENST00000733252.1	-	633	No protein	-	lncRNA	-	-
ENST00000716229.1	-	544	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000733253.1	-	470	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 887 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000549357.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Annotation Attributes

QC splicing correct [Definitions]

dotter confirmed

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000549357.2

Summary

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Transcript: ENST00000549357.2

Summary

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