Transcript: ENST00000522961.2 ZFHX4-AS1-204

Description

ZFHX4 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44165]

Location

Chromosome 8: 76,483,936-76,683,281 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 88432 variant alleles and maps to 147 oligo probes.

Gene

This transcript is a product of gene ENSG00000253661.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000522961.2	ZFHX4-AS1-204	630	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000663063.2	ZFHX4-AS1-206	5012	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000666902.3	ZFHX4-AS1-208	3752	No protein	-	lncRNA	-	-
ENST00000523977.2	ZFHX4-AS1-205	2353	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000692896.3	ZFHX4-AS1-211	1990	No protein	-	lncRNA	-	-
ENST00000689032.2	ZFHX4-AS1-210	1879	No protein	-	lncRNA	-	-
ENST00000814140.1	ZFHX4-AS1-217	1876	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000518143.3	ZFHX4-AS1-201	1856	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000522357.2	ZFHX4-AS1-203	1766	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000663655.3	ZFHX4-AS1-207	1723	No protein	-	lncRNA	-	-
ENST00000814142.1	ZFHX4-AS1-219	1691	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000814147.1	ZFHX4-AS1-224	1667	No protein	-	lncRNA	-	-
ENST00000814141.1	ZFHX4-AS1-218	1631	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000814139.1	ZFHX4-AS1-216	1575	No protein	-	lncRNA	-	-
ENST00000669823.2	ZFHX4-AS1-209	1431	No protein	-	lncRNA	-	-
ENST00000814138.1	ZFHX4-AS1-215	1408	No protein	-	lncRNA	-	-
ENST00000814148.1	ZFHX4-AS1-225	1377	No protein	-	lncRNA	-	-
ENST00000814144.1	ZFHX4-AS1-221	911	No protein	-	lncRNA	-	-
ENST00000521894.1	ZFHX4-AS1-202	821	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000814146.1	ZFHX4-AS1-223	779	No protein	-	lncRNA	-	-
ENST00000814136.1	ZFHX4-AS1-213	745	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000814135.1	ZFHX4-AS1-212	642	No protein	-	lncRNA	-	-
ENST00000814143.1	ZFHX4-AS1-220	559	No protein	-	lncRNA	-	-
ENST00000814145.1	ZFHX4-AS1-222	511	No protein	-	lncRNA	-	-
ENST00000814137.1	ZFHX4-AS1-214	506	No protein	-	lncRNA	-	-
ENST00000814149.1	ZFHX4-AS1-226	412	No protein	-	lncRNA	-	-
ENST00000814150.1	ZFHX4-AS1-227	377	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 630 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENST00000522961.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000522961.2 ZFHX4-AS1-204

Summary

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Transcript: ENST00000522961.2 ZFHX4-AS1-204

Summary

About Us

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