Transcript: ENST00000522848.6 SDHAP3-210

Description

SDHA pseudogene 3 [Source:NCBI gene (formerly Entrezgene);Acc:728609]

Gene Synonyms

SDHACL, SDHAL

Location

Chromosome 5: 1,601,916-1,633,981 reverse strand.

About this transcript

This transcript has 4 exons and maps to 232 oligo probes.

Gene

This transcript is a product of gene ENSG00000291079.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000715189.2	SDHAP3-232	6872	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENST00000721038.1	SDHAP3-233	1868	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721088.1	SDHAP3-283	2998	No protein	-	lncRNA	-	-
ENST00000721402.1	SDHAP3-320	2654	No protein	-	lncRNA	-	-
ENST00000652578.1	SDHAP3-211	2585	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721039.1	SDHAP3-234	2406	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000507841.5	SDHAP3-208	2338	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000721040.1	SDHAP3-235	2320	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000512335.5	SDHAP3-209	2231	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000436493.3	SDHAP3-203	2217	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000721417.1	SDHAP3-333	2115	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721106.1	SDHAP3-301	2094	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000691115.2	SDHAP3-223	2054	No protein	-	lncRNA	-	-
ENST00000721416.1	SDHAP3-332	2054	No protein	-	lncRNA	-	-
ENST00000721054.1	SDHAP3-249	2008	No protein	-	lncRNA	-	-
ENST00000721434.1	SDHAP3-350	2003	No protein	-	lncRNA	-	-
ENST00000721421.1	SDHAP3-337	1934	No protein	-	lncRNA	-	-
ENST00000721426.1	SDHAP3-342	1919	No protein	-	lncRNA	-	-
ENST00000721052.1	SDHAP3-247	1865	No protein	-	lncRNA	-	-
ENST00000721062.1	SDHAP3-257	1833	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721098.1	SDHAP3-293	1830	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721453.1	SDHAP3-369	1770	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000687772.2	SDHAP3-214	1713	No protein	-	lncRNA	-	-
ENST00000721061.1	SDHAP3-256	1703	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721452.1	SDHAP3-368	1681	No protein	-	lncRNA	-	-
ENST00000721043.1	SDHAP3-238	1672	No protein	-	lncRNA	-	-
ENST00000721405.1	SDHAP3-323	1668	No protein	-	lncRNA	-	-
ENST00000721404.1	SDHAP3-322	1651	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721053.1	SDHAP3-248	1639	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721101.1	SDHAP3-296	1622	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000689786.2	SDHAP3-218	1614	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721415.1	SDHAP3-331	1593	No protein	-	lncRNA	-	-
ENST00000690916.3	SDHAP3-221	1592	No protein	-	lncRNA	-	-
ENST00000721410.1	SDHAP3-326	1592	No protein	-	lncRNA	-	-
ENST00000721447.1	SDHAP3-363	1592	No protein	-	lncRNA	-	-
ENST00000721058.1	SDHAP3-253	1579	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721049.1	SDHAP3-244	1561	No protein	-	lncRNA	-	-
ENST00000721122.1	SDHAP3-317	1561	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721095.1	SDHAP3-290	1553	No protein	-	lncRNA	-	-
ENST00000721046.1	SDHAP3-241	1550	No protein	-	lncRNA	-	-
ENST00000721412.1	SDHAP3-328	1523	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000693722.2	SDHAP3-226	1509	No protein	-	lncRNA	-	-
ENST00000721041.1	SDHAP3-236	1505	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721113.1	SDHAP3-308	1493	No protein	-	lncRNA	-	-
ENST00000693074.2	SDHAP3-225	1492	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000686018.2	SDHAP3-213	1488	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721065.1	SDHAP3-260	1468	No protein	-	lncRNA	-	-
ENST00000721044.1	SDHAP3-239	1464	No protein	-	lncRNA	-	-
ENST00000721051.1	SDHAP3-246	1450	No protein	-	lncRNA	-	-
ENST00000343123.6	SDHAP3-202	1444	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000721059.1	SDHAP3-254	1440	No protein	-	lncRNA	-	-
ENST00000721446.1	SDHAP3-362	1433	No protein	-	lncRNA	-	-
ENST00000689007.3	SDHAP3-216	1417	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721441.1	SDHAP3-357	1405	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721050.1	SDHAP3-245	1399	No protein	-	lncRNA	-	-
ENST00000721069.1	SDHAP3-264	1392	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721057.1	SDHAP3-252	1384	No protein	-	lncRNA	-	-
ENST00000721090.1	SDHAP3-285	1383	No protein	-	lncRNA	-	-
ENST00000721448.1	SDHAP3-364	1380	No protein	-	lncRNA	-	-
ENST00000721045.1	SDHAP3-240	1377	No protein	-	lncRNA	-	-
ENST00000721406.1	SDHAP3-324	1371	No protein	-	lncRNA	-	-
ENST00000721115.1	SDHAP3-310	1355	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000701146.1	SDHAP3-228	1349	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721454.1	SDHAP3-370	1346	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721087.1	SDHAP3-282	1340	No protein	-	lncRNA	-	-
ENST00000721111.1	SDHAP3-306	1324	No protein	-	lncRNA	-	-
ENST00000690945.3	SDHAP3-222	1320	No protein	-	lncRNA	-	-
ENST00000721450.1	SDHAP3-366	1311	No protein	-	lncRNA	-	-
ENST00000721092.1	SDHAP3-287	1307	No protein	-	lncRNA	-	-
ENST00000721086.1	SDHAP3-281	1306	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721413.1	SDHAP3-329	1305	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721456.1	SDHAP3-372	1291	No protein	-	lncRNA	-	-
ENST00000721420.1	SDHAP3-336	1287	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721419.1	SDHAP3-335	1280	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721082.1	SDHAP3-277	1273	No protein	-	lncRNA	-	-
ENST00000721064.1	SDHAP3-259	1265	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721403.1	SDHAP3-321	1255	No protein	-	lncRNA	-	-
ENST00000721424.1	SDHAP3-340	1254	No protein	-	lncRNA	-	-
ENST00000721097.1	SDHAP3-292	1240	No protein	-	lncRNA	-	-
ENST00000721108.1	SDHAP3-303	1238	No protein	-	lncRNA	-	-
ENST00000721109.1	SDHAP3-304	1232	No protein	-	lncRNA	-	-
ENST00000721094.1	SDHAP3-289	1223	No protein	-	lncRNA	-	-
ENST00000721107.1	SDHAP3-302	1222	No protein	-	lncRNA	-	-
ENST00000507505.6	SDHAP3-207	1210	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000721622.1	SDHAP3-376	1197	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000690867.2	SDHAP3-220	1189	No protein	-	lncRNA	-	-
ENST00000721439.1	SDHAP3-355	1185	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721055.1	SDHAP3-250	1185	No protein	-	lncRNA	-	-
ENST00000721047.1	SDHAP3-242	1176	No protein	-	lncRNA	-	-
ENST00000721458.1	SDHAP3-374	1173	No protein	-	lncRNA	-	-
ENST00000721409.1	SDHAP3-325	1172	No protein	-	lncRNA	-	-
ENST00000721076.1	SDHAP3-271	1168	No protein	-	lncRNA	-	-
ENST00000522848.6	SDHAP3-210	1164	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000721110.1	SDHAP3-305	1164	No protein	-	lncRNA	-	-
ENST00000721443.1	SDHAP3-359	1161	No protein	-	lncRNA	-	-
ENST00000721056.1	SDHAP3-251	1143	No protein	-	lncRNA	-	-
ENST00000721042.1	SDHAP3-237	1142	No protein	-	lncRNA	-	-
ENST00000684972.2	SDHAP3-212	1141	No protein	-	lncRNA	-	-
ENST00000702044.1	SDHAP3-231	1140	No protein	-	lncRNA	-	-
ENST00000721418.1	SDHAP3-334	1131	No protein	-	lncRNA	-	-
ENST00000721103.1	SDHAP3-298	1122	No protein	-	lncRNA	-	-
ENST00000721414.1	SDHAP3-330	1119	No protein	-	lncRNA	-	-
ENST00000721048.1	SDHAP3-243	1118	No protein	-	lncRNA	-	-
ENST00000721455.1	SDHAP3-371	1117	No protein	-	lncRNA	-	-
ENST00000721096.1	SDHAP3-291	1110	No protein	-	lncRNA	-	-
ENST00000721083.1	SDHAP3-278	1109	No protein	-	lncRNA	-	-
ENST00000721084.1	SDHAP3-279	1109	No protein	-	lncRNA	-	-
ENST00000721422.1	SDHAP3-338	1107	No protein	-	lncRNA	-	-
ENST00000721449.1	SDHAP3-365	1103	No protein	-	lncRNA	-	-
ENST00000721451.1	SDHAP3-367	1098	No protein	-	lncRNA	-	-
ENST00000691787.2	SDHAP3-224	1093	No protein	-	lncRNA	-	-
ENST00000689567.3	SDHAP3-217	1087	No protein	-	lncRNA	-	-
ENST00000721457.1	SDHAP3-373	1085	No protein	-	lncRNA	-	-
ENST00000721073.1	SDHAP3-268	1084	No protein	-	lncRNA	-	-
ENST00000721093.1	SDHAP3-288	1084	No protein	-	lncRNA	-	-
ENST00000721112.1	SDHAP3-307	1067	No protein	-	lncRNA	-	-
ENST00000688433.2	SDHAP3-215	1065	No protein	-	lncRNA	-	-
ENST00000721411.1	SDHAP3-327	1059	No protein	-	lncRNA	-	-
ENST00000721079.1	SDHAP3-274	1051	No protein	-	lncRNA	-	-
ENST00000721114.1	SDHAP3-309	1043	No protein	-	lncRNA	-	-
ENST00000721075.1	SDHAP3-270	1037	No protein	-	lncRNA	-	-
ENST00000721074.1	SDHAP3-269	1036	No protein	-	lncRNA	-	-
ENST00000507290.5	SDHAP3-206	1033	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000721060.1	SDHAP3-255	1031	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721429.1	SDHAP3-345	1030	No protein	-	lncRNA	-	-
ENST00000721427.1	SDHAP3-343	1028	No protein	-	lncRNA	-	-
ENST00000721091.1	SDHAP3-286	1026	No protein	-	lncRNA	-	-
ENST00000721423.1	SDHAP3-339	1015	No protein	-	lncRNA	-	-
ENST00000721070.1	SDHAP3-265	1004	No protein	-	lncRNA	-	-
ENST00000721104.1	SDHAP3-299	993	No protein	-	lncRNA	-	-
ENST00000721435.1	SDHAP3-351	985	No protein	-	lncRNA	-	-
ENST00000701631.2	SDHAP3-230	975	No protein	-	lncRNA	-	-
ENST00000721085.1	SDHAP3-280	959	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721440.1	SDHAP3-356	944	No protein	-	lncRNA	-	-
ENST00000721102.1	SDHAP3-297	938	No protein	-	lncRNA	-	-
ENST00000721428.1	SDHAP3-344	936	No protein	-	lncRNA	-	-
ENST00000721105.1	SDHAP3-300	927	No protein	-	lncRNA	-	-
ENST00000721433.1	SDHAP3-349	923	No protein	-	lncRNA	-	-
ENST00000721077.1	SDHAP3-272	923	No protein	-	lncRNA	-	-
ENST00000690809.1	SDHAP3-219	917	No protein	-	lncRNA	-	-
ENST00000721068.1	SDHAP3-263	909	No protein	-	lncRNA	-	-
ENST00000721067.1	SDHAP3-262	907	No protein	-	lncRNA	-	-
ENST00000503113.2	SDHAP3-205	906	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000721430.1	SDHAP3-346	902	No protein	-	lncRNA	-	-
ENST00000721116.1	SDHAP3-311	902	No protein	-	lncRNA	-	-
ENST00000721432.1	SDHAP3-348	900	No protein	-	lncRNA	-	-
ENST00000721063.1	SDHAP3-258	890	No protein	-	lncRNA	-	-
ENST00000721436.1	SDHAP3-352	885	No protein	-	lncRNA	-	-
ENST00000721442.1	SDHAP3-358	873	No protein	-	lncRNA	-	-
ENST00000721119.1	SDHAP3-314	862	No protein	-	lncRNA	-	-
ENST00000701274.2	SDHAP3-229	858	No protein	-	lncRNA	-	-
ENST00000721089.1	SDHAP3-284	821	No protein	-	lncRNA	-	-
ENST00000721459.1	SDHAP3-375	712	No protein	-	lncRNA	-	-
ENST00000721066.1	SDHAP3-261	711	No protein	-	lncRNA	-	-
ENST00000721117.1	SDHAP3-312	689	No protein	-	lncRNA	-	-
ENST00000721118.1	SDHAP3-313	686	No protein	-	lncRNA	-	-
ENST00000721431.1	SDHAP3-347	683	No protein	-	lncRNA	-	-
ENST00000721624.1	SDHAP3-378	682	No protein	-	lncRNA	-	-
ENST00000721080.1	SDHAP3-275	673	No protein	-	lncRNA	-	-
ENST00000721120.1	SDHAP3-315	664	No protein	-	lncRNA	-	-
ENST00000721425.1	SDHAP3-341	661	No protein	-	lncRNA	-	-
ENST00000721100.1	SDHAP3-295	637	No protein	-	lncRNA	-	-
ENST00000721072.1	SDHAP3-267	632	No protein	-	lncRNA	-	-
ENST00000721123.1	SDHAP3-318	631	No protein	-	lncRNA	-	-
ENST00000721099.1	SDHAP3-294	625	No protein	-	lncRNA	-	-
ENST00000721121.1	SDHAP3-316	600	No protein	-	lncRNA	-	-
ENST00000721078.1	SDHAP3-273	588	No protein	-	lncRNA	-	-
ENST00000721081.1	SDHAP3-276	543	No protein	-	lncRNA	-	-
ENST00000721071.1	SDHAP3-266	529	No protein	-	lncRNA	-	-
ENST00000721437.1	SDHAP3-353	485	No protein	-	lncRNA	-	-
ENST00000700937.2	SDHAP3-227	477	No protein	-	lncRNA	-	-
ENST00000721623.1	SDHAP3-377	475	No protein	-	lncRNA	-	-
ENST00000721444.1	SDHAP3-360	389	No protein	-	lncRNA	-	-
ENST00000721445.1	SDHAP3-361	388	No protein	-	lncRNA	-	-
ENST00000721438.1	SDHAP3-354	369	No protein	-	lncRNA	-	-
ENST00000721124.1	SDHAP3-319	369	No protein	-	lncRNA	-	-
ENST00000502273.8	SDHAP3-204	206	No protein	-	lncRNA	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,164 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000522848.6

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Annotation Attributes

overlaps pseudogene [Definitions]

Transcript: ENST00000522848.6 SDHAP3-210

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Transcript: ENST00000522848.6 SDHAP3-210

Summary

About Us

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