Transcript: ENST00000522841.6

Description

novel transcript

Location

Chromosome 16: 21,463,205-21,520,444 reverse strand.

About this transcript

This transcript has 12 exons and maps to 1852 oligo probes.

Gene

This transcript is a product of gene ENSG00000291073.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000789757.1	-	3210	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000520823.7	-	4700	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000522841.6	-	2774	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000435197.3	-	2592	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000440195.2	-	2543	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000789756.1	-	2485	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000437413.3	-	2461	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000789769.1	-	2292	No protein	-	lncRNA	-	-
ENST00000789774.1	-	2106	No protein	-	lncRNA	-	-
ENST00000789758.1	-	2020	No protein	-	lncRNA	-	-
ENST00000789763.1	-	2017	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000789789.1	-	1930	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000789759.1	-	1808	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000789767.1	-	1782	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000789775.1	-	1776	No protein	-	lncRNA	-	-
ENST00000789770.1	-	1771	No protein	-	lncRNA	-	-
ENST00000789776.1	-	1624	No protein	-	lncRNA	-	-
ENST00000789782.1	-	1598	No protein	-	lncRNA	-	-
ENST00000789780.1	-	1510	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000789761.1	-	1470	No protein	-	lncRNA	-	-
ENST00000789772.1	-	1434	No protein	-	lncRNA	-	-
ENST00000789779.1	-	1416	No protein	-	lncRNA	-	-
ENST00000789794.1	-	1403	No protein	-	lncRNA	-	-
ENST00000789790.1	-	1366	No protein	-	lncRNA	-	-
ENST00000789764.1	-	1326	No protein	-	lncRNA	-	-
ENST00000789765.1	-	1287	No protein	-	lncRNA	-	-
ENST00000789777.1	-	1225	No protein	-	lncRNA	-	-
ENST00000789788.1	-	1164	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000789778.1	-	1115	No protein	-	lncRNA	-	-
ENST00000789785.1	-	1100	No protein	-	lncRNA	-	-
ENST00000789783.1	-	1065	No protein	-	lncRNA	-	-
ENST00000789781.1	-	1030	No protein	-	lncRNA	-	-
ENST00000789797.1	-	948	No protein	-	lncRNA	-	-
ENST00000789766.1	-	942	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000789760.1	-	902	No protein	-	lncRNA	-	-
ENST00000789787.1	-	895	No protein	-	lncRNA	-	-
ENST00000789796.1	-	879	No protein	-	lncRNA	-	-
ENST00000789786.1	-	838	No protein	-	lncRNA	-	-
ENST00000789762.1	-	837	No protein	-	lncRNA	-	-
ENST00000789795.1	-	814	No protein	-	lncRNA	-	-
ENST00000789771.1	-	813	No protein	-	lncRNA	-	-
ENST00000789768.1	-	765	No protein	-	lncRNA	-	-
ENST00000789798.1	-	738	No protein	-	lncRNA	-	-
ENST00000789791.1	-	563	No protein	-	lncRNA	-	-
ENST00000789792.1	-	530	No protein	-	lncRNA	-	-
ENST00000789793.1	-	505	No protein	-	lncRNA	-	-
ENST00000789773.1	-	424	No protein	-	lncRNA	-	-
ENST00000789784.1	-	254	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 12, Coding exons: 0, Transcript length: 2,774 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000522841.6

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

overlaps pseudogene [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000522841.6

Summary

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Transcript: ENST00000522841.6

Summary

About Us

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