Transcript: ENST00000512129.2 LEF1-AS1-206

Description

LEF1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40339]

Location

Chromosome 4: 108,176,288-108,257,674 forward strand.

About this transcript

This transcript has 3 exons and maps to 223 oligo probes.

Gene

This transcript is a product of gene ENSG00000232021.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000506314.2	LEF1-AS1-202	3400	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000732953.1	LEF1-AS1-215	1610	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000512637.7	LEF1-AS1-207	2105	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000733043.1	LEF1-AS1-283	1991	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000733041.1	LEF1-AS1-281	1978	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000665040.3	LEF1-AS1-209	1907	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000687804.2	LEF1-AS1-210	1412	No protein	-	lncRNA	-	-
ENST00000512129.2	LEF1-AS1-206	1268	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000732955.1	LEF1-AS1-217	1192	No protein	-	lncRNA	-	-
ENST00000508286.2	LEF1-AS1-205	1189	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000732960.1	LEF1-AS1-222	1154	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000693606.3	LEF1-AS1-213	1084	No protein	-	lncRNA	-	-
ENST00000732992.1	LEF1-AS1-254	1078	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000692331.3	LEF1-AS1-211	1073	No protein	-	lncRNA	-	-
ENST00000436413.6	LEF1-AS1-201	1049	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000733033.1	LEF1-AS1-273	1000	No protein	-	lncRNA	-	-
ENST00000732981.1	LEF1-AS1-243	995	No protein	-	lncRNA	-	-
ENST00000733037.1	LEF1-AS1-277	988	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000733039.1	LEF1-AS1-279	972	No protein	-	lncRNA	-	-
ENST00000732954.1	LEF1-AS1-216	959	No protein	-	lncRNA	-	-
ENST00000732988.1	LEF1-AS1-250	954	No protein	-	lncRNA	-	-
ENST00000732968.1	LEF1-AS1-230	913	No protein	-	lncRNA	-	-
ENST00000732999.1	LEF1-AS1-260	903	No protein	-	lncRNA	-	-
ENST00000733030.1	LEF1-AS1-270	882	No protein	-	lncRNA	-	-
ENST00000732980.1	LEF1-AS1-242	853	No protein	-	lncRNA	-	-
ENST00000659790.2	LEF1-AS1-208	846	No protein	-	lncRNA	-	-
ENST00000733024.1	LEF1-AS1-266	846	No protein	-	lncRNA	-	-
ENST00000733020.1	LEF1-AS1-264	833	No protein	-	lncRNA	-	-
ENST00000733034.1	LEF1-AS1-274	833	No protein	-	lncRNA	-	-
ENST00000732997.1	LEF1-AS1-258	831	No protein	-	lncRNA	-	-
ENST00000732967.1	LEF1-AS1-229	830	No protein	-	lncRNA	-	-
ENST00000732979.1	LEF1-AS1-241	823	No protein	-	lncRNA	-	-
ENST00000732971.1	LEF1-AS1-233	810	No protein	-	lncRNA	-	-
ENST00000732962.1	LEF1-AS1-224	809	No protein	-	lncRNA	-	-
ENST00000732977.1	LEF1-AS1-239	808	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000732959.1	LEF1-AS1-221	791	No protein	-	lncRNA	-	-
ENST00000732990.1	LEF1-AS1-252	791	No protein	-	lncRNA	-	-
ENST00000732975.1	LEF1-AS1-237	772	No protein	-	lncRNA	-	-
ENST00000508266.2	LEF1-AS1-204	769	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000732996.1	LEF1-AS1-257	769	No protein	-	lncRNA	-	-
ENST00000733026.1	LEF1-AS1-267	759	No protein	-	lncRNA	-	-
ENST00000732956.1	LEF1-AS1-218	749	No protein	-	lncRNA	-	-
ENST00000733040.1	LEF1-AS1-280	746	No protein	-	lncRNA	-	-
ENST00000693123.2	LEF1-AS1-212	744	No protein	-	lncRNA	-	-
ENST00000732989.1	LEF1-AS1-251	740	No protein	-	lncRNA	-	-
ENST00000700844.1	LEF1-AS1-214	730	No protein	-	lncRNA	-	-
ENST00000732957.1	LEF1-AS1-219	674	No protein	-	lncRNA	-	-
ENST00000732985.1	LEF1-AS1-247	673	No protein	-	lncRNA	-	-
ENST00000732974.1	LEF1-AS1-236	661	No protein	-	lncRNA	-	-
ENST00000732978.1	LEF1-AS1-240	661	No protein	-	lncRNA	-	-
ENST00000732976.1	LEF1-AS1-238	660	No protein	-	lncRNA	-	-
ENST00000733035.1	LEF1-AS1-275	657	No protein	-	lncRNA	-	-
ENST00000732984.1	LEF1-AS1-246	643	No protein	-	lncRNA	-	-
ENST00000732983.1	LEF1-AS1-245	629	No protein	-	lncRNA	-	-
ENST00000732961.1	LEF1-AS1-223	625	No protein	-	lncRNA	-	-
ENST00000732969.1	LEF1-AS1-231	623	No protein	-	lncRNA	-	-
ENST00000732970.1	LEF1-AS1-232	619	No protein	-	lncRNA	-	-
ENST00000732973.1	LEF1-AS1-235	619	No protein	-	lncRNA	-	-
ENST00000732965.1	LEF1-AS1-227	591	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000732987.1	LEF1-AS1-249	589	No protein	-	lncRNA	-	-
ENST00000733032.1	LEF1-AS1-272	584	No protein	-	lncRNA	-	-
ENST00000732972.1	LEF1-AS1-234	582	No protein	-	lncRNA	-	-
ENST00000732993.1	LEF1-AS1-255	576	No protein	-	lncRNA	-	-
ENST00000733000.1	LEF1-AS1-261	572	No protein	-	lncRNA	-	-
ENST00000732958.1	LEF1-AS1-220	563	No protein	-	lncRNA	-	-
ENST00000732966.1	LEF1-AS1-228	553	No protein	-	lncRNA	-	-
ENST00000733045.1	LEF1-AS1-285	550	No protein	-	lncRNA	-	-
ENST00000733018.1	LEF1-AS1-263	542	No protein	-	lncRNA	-	-
ENST00000732991.1	LEF1-AS1-253	521	No protein	-	lncRNA	-	-
ENST00000732964.1	LEF1-AS1-226	501	No protein	-	lncRNA	-	-
ENST00000732994.1	LEF1-AS1-256	491	No protein	-	lncRNA	-	-
ENST00000733038.1	LEF1-AS1-278	482	No protein	-	lncRNA	-	-
ENST00000733044.1	LEF1-AS1-284	465	No protein	-	lncRNA	-	-
ENST00000732998.1	LEF1-AS1-259	461	No protein	-	lncRNA	-	-
ENST00000507799.1	LEF1-AS1-203	459	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000733036.1	LEF1-AS1-276	453	No protein	-	lncRNA	-	-
ENST00000732986.1	LEF1-AS1-248	414	No protein	-	lncRNA	-	-
ENST00000733029.1	LEF1-AS1-269	412	No protein	-	lncRNA	-	-
ENST00000733031.1	LEF1-AS1-271	403	No protein	-	lncRNA	-	-
ENST00000732963.1	LEF1-AS1-225	400	No protein	-	lncRNA	-	-
ENST00000733028.1	LEF1-AS1-268	393	No protein	-	lncRNA	-	-
ENST00000733016.1	LEF1-AS1-262	366	No protein	-	lncRNA	-	-
ENST00000733042.1	LEF1-AS1-282	354	No protein	-	lncRNA	-	-
ENST00000732982.1	LEF1-AS1-244	341	No protein	-	lncRNA	-	-
ENST00000733022.1	LEF1-AS1-265	174	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,268 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000512129.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000512129.2 LEF1-AS1-206

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Transcript: ENST00000512129.2 LEF1-AS1-206

Summary

About Us

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