Transcript: ENST00000509449.1

Description

novel transcript

Location

Chromosome 4: 39,112,677-39,126,818 reverse strand.

About this transcript

This transcript has 4 exons and maps to 147 oligo probes.

Gene

This transcript is a product of gene ENSG00000249207.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000668468.2	-	2450	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654813.2	-	1968	No protein	-	lncRNA	-	-
ENST00000772109.1	-	1431	No protein	-	lncRNA	-	-
ENST00000772110.1	-	993	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000509449.1	-	946	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000772116.1	-	937	No protein	-	lncRNA	-	-
ENST00000772111.1	-	660	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000772112.1	-	660	No protein	-	lncRNA	-	-
ENST00000772118.1	-	649	No protein	-	lncRNA	-	-
ENST00000772117.1	-	645	No protein	-	lncRNA	-	-
ENST00000772113.1	-	582	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000772115.1	-	571	No protein	-	lncRNA	-	-
ENST00000772120.1	-	556	No protein	-	lncRNA	-	-
ENST00000772114.1	-	512	No protein	-	lncRNA	-	-
ENST00000772121.1	-	496	No protein	-	lncRNA	-	-
ENST00000772119.1	-	464	No protein	-	lncRNA	-	-
ENST00000772122.1	-	293	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 946 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000509449.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000509449.1

Summary

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Transcript: ENST00000509449.1

Summary

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