Transcript: ENST00000508519.6

Description

novel transcript

Location

Chromosome 4: 119,454,848-119,519,646 forward strand.

About this transcript

This transcript has 11 exons and maps to 651 oligo probes.

Gene

This transcript is a product of gene ENSG00000291203.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000503038.1	-	2376	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000513147.1	-	585	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000776106.1	-	1432	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000776114.1	-	2162	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000688857.3	-	2033	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000692067.2	-	1964	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000776178.1	-	1962	No protein	-	lncRNA	-	-
ENST00000685769.2	-	1959	No protein	-	lncRNA	-	-
ENST00000776175.1	-	1954	No protein	-	lncRNA	-	-
ENST00000701593.1	-	1941	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000776116.1	-	1934	No protein	-	lncRNA	-	-
ENST00000776183.1	-	1890	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000693497.2	-	1881	No protein	-	lncRNA	-	-
ENST00000776122.1	-	1866	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000776140.1	-	1863	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000693650.3	-	1847	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000776176.1	-	1807	No protein	-	lncRNA	-	-
ENST00000502760.2	-	1779	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000776182.1	-	1771	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000776135.1	-	1712	No protein	-	lncRNA	-	-
ENST00000776160.1	-	1712	No protein	-	lncRNA	-	-
ENST00000776109.1	-	1692	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000776132.1	-	1692	No protein	-	lncRNA	-	-
ENST00000776131.1	-	1686	No protein	-	lncRNA	-	-
ENST00000776112.1	-	1683	No protein	-	lncRNA	-	-
ENST00000776108.1	-	1658	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000776120.1	-	1658	No protein	-	lncRNA	-	-
ENST00000776143.1	-	1641	No protein	-	lncRNA	-	-
ENST00000689183.3	-	1594	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000701246.1	-	1586	No protein	-	lncRNA	-	-
ENST00000692409.1	-	1579	No protein	-	lncRNA	-	-
ENST00000776164.1	-	1563	No protein	-	lncRNA	-	-
ENST00000776167.1	-	1562	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000776117.1	-	1551	No protein	-	lncRNA	-	-
ENST00000776154.1	-	1547	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000776123.1	-	1546	No protein	-	lncRNA	-	-
ENST00000688315.2	-	1543	No protein	-	lncRNA	-	-
ENST00000776110.1	-	1537	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000776163.1	-	1537	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000776113.1	-	1536	No protein	-	lncRNA	-	-
ENST00000776151.1	-	1533	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000776145.1	-	1507	No protein	-	lncRNA	-	-
ENST00000685974.2	-	1506	No protein	-	lncRNA	-	-
ENST00000686002.2	-	1495	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000776166.1	-	1495	No protein	-	lncRNA	-	-
ENST00000510011.6	-	1487	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000776152.1	-	1487	No protein	-	lncRNA	-	-
ENST00000685525.2	-	1476	No protein	-	lncRNA	-	-
ENST00000692642.2	-	1472	No protein	-	lncRNA	-	-
ENST00000776139.1	-	1472	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000776130.1	-	1471	No protein	-	lncRNA	-	-
ENST00000776144.1	-	1460	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000776170.1	-	1454	No protein	-	lncRNA	-	-
ENST00000692945.1	-	1444	No protein	-	lncRNA	-	-
ENST00000688480.2	-	1443	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000776119.1	-	1427	No protein	-	lncRNA	-	-
ENST00000776124.1	-	1415	No protein	-	lncRNA	-	-
ENST00000776125.1	-	1414	No protein	-	lncRNA	-	-
ENST00000776142.1	-	1407	No protein	-	lncRNA	-	-
ENST00000776127.1	-	1390	No protein	-	lncRNA	-	-
ENST00000701107.2	-	1388	No protein	-	lncRNA	-	-
ENST00000776158.1	-	1381	No protein	-	lncRNA	-	-
ENST00000690731.2	-	1380	No protein	-	lncRNA	-	-
ENST00000701137.2	-	1378	No protein	-	lncRNA	-	-
ENST00000701817.1	-	1374	No protein	-	lncRNA	-	-
ENST00000776121.1	-	1374	No protein	-	lncRNA	-	-
ENST00000776107.1	-	1371	No protein	-	lncRNA	-	-
ENST00000776168.1	-	1365	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000508519.6	-	1361	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000776126.1	-	1346	No protein	-	lncRNA	-	-
ENST00000686202.2	-	1345	No protein	-	lncRNA	-	-
ENST00000776150.1	-	1344	No protein	-	lncRNA	-	-
ENST00000776172.1	-	1344	No protein	-	lncRNA	-	-
ENST00000776118.1	-	1335	No protein	-	lncRNA	-	-
ENST00000776111.1	-	1327	No protein	-	lncRNA	-	-
ENST00000776149.1	-	1327	No protein	-	lncRNA	-	-
ENST00000776162.1	-	1327	No protein	-	lncRNA	-	-
ENST00000776146.1	-	1324	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000776161.1	-	1317	No protein	-	lncRNA	-	-
ENST00000686925.3	-	1315	No protein	-	lncRNA	-	-
ENST00000776188.1	-	1315	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000776181.1	-	1313	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000776155.1	-	1309	No protein	-	lncRNA	-	-
ENST00000776148.1	-	1276	No protein	-	lncRNA	-	-
ENST00000776157.1	-	1272	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000776159.1	-	1270	No protein	-	lncRNA	-	-
ENST00000701349.2	-	1237	No protein	-	lncRNA	-	-
ENST00000776141.1	-	1236	No protein	-	lncRNA	-	-
ENST00000776115.1	-	1206	No protein	-	lncRNA	-	-
ENST00000776189.1	-	1206	No protein	-	lncRNA	-	-
ENST00000776129.1	-	1179	No protein	-	lncRNA	-	-
ENST00000776156.1	-	1165	No protein	-	lncRNA	-	-
ENST00000776171.1	-	1152	No protein	-	lncRNA	-	-
ENST00000776137.1	-	1102	No protein	-	lncRNA	-	-
ENST00000776153.1	-	1096	No protein	-	lncRNA	-	-
ENST00000776174.1	-	1095	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000776147.1	-	1093	No protein	-	lncRNA	-	-
ENST00000515251.4	-	1078	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000776133.1	-	1051	No protein	-	lncRNA	-	-
ENST00000776165.1	-	1047	No protein	-	lncRNA	-	-
ENST00000776134.1	-	1040	No protein	-	lncRNA	-	-
ENST00000776191.1	-	1033	No protein	-	lncRNA	-	-
ENST00000776169.1	-	982	No protein	-	lncRNA	-	-
ENST00000498873.5	-	981	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000776128.1	-	980	No protein	-	lncRNA	-	-
ENST00000776180.1	-	968	No protein	-	lncRNA	-	-
ENST00000776177.1	-	876	No protein	-	lncRNA	-	-
ENST00000701524.2	-	667	No protein	-	lncRNA	-	-
ENST00000776179.1	-	665	No protein	-	lncRNA	-	-
ENST00000511950.1	-	605	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000776138.1	-	599	No protein	-	lncRNA	-	-
ENST00000504422.6	-	588	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000776190.1	-	583	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000776136.1	-	544	No protein	-	lncRNA	-	-
ENST00000510844.5	-	541	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000776186.1	-	506	No protein	-	lncRNA	-	-
ENST00000776187.1	-	491	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000500559.6	-	453	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000776185.1	-	434	No protein	-	lncRNA	-	-
ENST00000776184.1	-	428	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000776173.1	-	376	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 11, Coding exons: 0, Transcript length: 1,361 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000508519.6

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Annotation Attributes

overlaps pseudogene [Definitions]

Transcript: ENST00000508519.6

Summary

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Transcript: ENST00000508519.6

Summary

About Us

Get help

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