Transcript: ENST00000470263.5 LINC02008-201

Description

long intergenic non-protein coding RNA 2008 [Source:HGNC Symbol;Acc:HGNC:52844]

Location

Chromosome 3: 81,986,138-82,463,675 forward strand.

About this transcript

This transcript has 9 exons, is associated with 205430 variant alleles and maps to 350 oligo probes.

Gene

This transcript is a product of gene ENSG00000239440.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000470263.5	LINC02008-201	1951	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000654980.1	LINC02008-204	2177	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000666519.1	LINC02008-206	1655	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668833.1	LINC02008-207	1183	No protein	-	lncRNA	-	-
ENST00000653255.1	LINC02008-203	1139	No protein	-	lncRNA	-	-
ENST00000666096.1	LINC02008-205	830	No protein	-	lncRNA	-	-
ENST00000494340.3	LINC02008-202	776	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000725961.1	LINC02008-208	764	No protein	-	lncRNA	-	-
ENST00000725968.1	LINC02008-215	715	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000725962.1	LINC02008-209	613	No protein	-	lncRNA	-	-
ENST00000725964.1	LINC02008-211	603	No protein	-	lncRNA	-	-
ENST00000725963.1	LINC02008-210	485	No protein	-	lncRNA	-	-
ENST00000725966.1	LINC02008-213	469	No protein	-	lncRNA	-	-
ENST00000725967.1	LINC02008-214	371	No protein	-	lncRNA	-	-
ENST00000725965.1	LINC02008-212	361	No protein	-	lncRNA	-	-
ENST00000725971.1	LINC02008-218	325	No protein	-	lncRNA	-	-
ENST00000725970.1	LINC02008-217	209	No protein	-	lncRNA	-	-
ENST00000725969.1	LINC02008-216	170	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 9, Coding exons: 0, Transcript length: 1,951 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000470263.5

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000470263.5 LINC02008-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000470263.5 LINC02008-201

Summary

About Us

Get help

Our sister sites

Follow us