Transcript: ENST00000450720.5 ALMS1P1-202

Description

ALMS1 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:29586]

Gene Synonyms

ALMS1L, ALMS1P

Location

Chromosome 2: 73,644,919-73,685,576 forward strand.

About this transcript

This transcript has 7 exons and maps to 340 oligo probes.

Gene

This transcript is a product of gene ENSG00000290727.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000755937.1	ALMS1P1-204	435	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000652439.1	ALMS1P1-203	3835	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000450720.5	ALMS1P1-202	1601	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000755941.1	ALMS1P1-208	1561	No protein	-	lncRNA	-	-
ENST00000755954.1	ALMS1P1-221	1516	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000755947.1	ALMS1P1-214	1284	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000755940.1	ALMS1P1-207	1170	No protein	-	lncRNA	-	-
ENST00000755946.1	ALMS1P1-213	1163	No protein	-	lncRNA	-	-
ENST00000755943.1	ALMS1P1-210	1137	No protein	-	lncRNA	-	-
ENST00000755953.1	ALMS1P1-220	1136	No protein	-	lncRNA	-	-
ENST00000755951.1	ALMS1P1-218	1083	No protein	-	lncRNA	-	-
ENST00000755942.1	ALMS1P1-209	988	No protein	-	lncRNA	-	-
ENST00000755945.1	ALMS1P1-212	952	No protein	-	lncRNA	-	-
ENST00000755952.1	ALMS1P1-219	909	No protein	-	lncRNA	-	-
ENST00000755944.1	ALMS1P1-211	864	No protein	-	lncRNA	-	-
ENST00000755950.1	ALMS1P1-217	813	No protein	-	lncRNA	-	-
ENST00000755938.1	ALMS1P1-205	812	No protein	-	lncRNA	-	-
ENST00000755948.1	ALMS1P1-215	767	No protein	-	lncRNA	-	-
ENST00000755949.1	ALMS1P1-216	714	No protein	-	lncRNA	-	-
ENST00000755939.1	ALMS1P1-206	517	No protein	-	lncRNA	-	-
ENST00000755955.1	ALMS1P1-222	454	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 1,601 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000450720.5

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

overlaps pseudogene [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000450720.5 ALMS1P1-202

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Transcript: ENST00000450720.5 ALMS1P1-202

Summary

About Us

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