Transcript: ENST00000449219.3 SEPTIN7P13-202

Description

septin 7 pseudogene 13 [Source:NCBI gene (formerly Entrezgene);Acc:100287497]

Location

Chromosome 1: 223,992,755-224,010,612 forward strand.

About this transcript

This transcript has 5 exons and maps to 719 oligo probes.

Gene

This transcript is a product of gene ENSG00000290989.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000572124.2	SEPTIN7P13-204	2669	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000540997.2	SEPTIN7P13-203	1886	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000782383.1	SEPTIN7P13-207	1232	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000782405.1	SEPTIN7P13-229	2056	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000449219.3	SEPTIN7P13-202	2022	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000782415.1	SEPTIN7P13-239	1923	No protein	-	lncRNA	-	-
ENST00000782412.1	SEPTIN7P13-236	1913	No protein	-	lncRNA	-	-
ENST00000782406.1	SEPTIN7P13-230	1845	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000782407.1	SEPTIN7P13-231	1820	No protein	-	lncRNA	-	-
ENST00000782414.1	SEPTIN7P13-238	1809	No protein	-	lncRNA	-	-
ENST00000782422.1	SEPTIN7P13-246	1797	No protein	-	lncRNA	-	-
ENST00000782416.1	SEPTIN7P13-240	1690	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000782395.1	SEPTIN7P13-219	1558	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000782419.1	SEPTIN7P13-243	1538	No protein	-	lncRNA	-	-
ENST00000782431.1	SEPTIN7P13-255	1481	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000782430.1	SEPTIN7P13-254	1472	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000782418.1	SEPTIN7P13-242	1429	No protein	-	lncRNA	-	-
ENST00000782386.1	SEPTIN7P13-210	1405	No protein	-	lncRNA	-	-
ENST00000782396.1	SEPTIN7P13-220	1304	No protein	-	lncRNA	-	-
ENST00000782392.1	SEPTIN7P13-216	1285	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000782385.1	SEPTIN7P13-209	1277	No protein	-	lncRNA	-	-
ENST00000782384.1	SEPTIN7P13-208	1276	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000782390.1	SEPTIN7P13-214	1264	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000782388.1	SEPTIN7P13-212	1239	No protein	-	lncRNA	-	-
ENST00000782394.1	SEPTIN7P13-218	1220	No protein	-	lncRNA	-	-
ENST00000782393.1	SEPTIN7P13-217	1210	No protein	-	lncRNA	-	-
ENST00000782413.1	SEPTIN7P13-237	1206	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000782420.1	SEPTIN7P13-244	1183	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000782427.1	SEPTIN7P13-251	1182	No protein	-	lncRNA	-	-
ENST00000782397.1	SEPTIN7P13-221	1101	No protein	-	lncRNA	-	-
ENST00000782391.1	SEPTIN7P13-215	1050	No protein	-	lncRNA	-	-
ENST00000782389.1	SEPTIN7P13-213	1046	No protein	-	lncRNA	-	-
ENST00000782401.1	SEPTIN7P13-225	1026	No protein	-	lncRNA	-	-
ENST00000782409.1	SEPTIN7P13-233	975	No protein	-	lncRNA	-	-
ENST00000782421.1	SEPTIN7P13-245	967	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000782387.1	SEPTIN7P13-211	911	No protein	-	lncRNA	-	-
ENST00000782399.1	SEPTIN7P13-223	897	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000782425.1	SEPTIN7P13-249	891	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000782400.1	SEPTIN7P13-224	878	No protein	-	lncRNA	-	-
ENST00000782424.1	SEPTIN7P13-248	860	No protein	-	lncRNA	-	-
ENST00000782411.1	SEPTIN7P13-235	848	No protein	-	lncRNA	-	-
ENST00000782404.1	SEPTIN7P13-228	818	No protein	-	lncRNA	-	-
ENST00000782398.1	SEPTIN7P13-222	800	No protein	-	lncRNA	-	-
ENST00000782428.1	SEPTIN7P13-252	760	No protein	-	lncRNA	-	-
ENST00000782429.1	SEPTIN7P13-253	752	No protein	-	lncRNA	-	-
ENST00000782408.1	SEPTIN7P13-232	749	No protein	-	lncRNA	-	-
ENST00000782402.1	SEPTIN7P13-226	724	No protein	-	lncRNA	-	-
ENST00000782432.1	SEPTIN7P13-256	699	No protein	-	lncRNA	-	-
ENST00000782423.1	SEPTIN7P13-247	669	No protein	-	lncRNA	-	-
ENST00000622033.4	SEPTIN7P13-206	624	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000782410.1	SEPTIN7P13-234	612	No protein	-	lncRNA	-	-
ENST00000782417.1	SEPTIN7P13-241	598	No protein	-	lncRNA	-	-
ENST00000782403.1	SEPTIN7P13-227	571	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000618315.4	SEPTIN7P13-205	487	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000782426.1	SEPTIN7P13-250	276	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 2,022 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000449219.3

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Annotation Attributes

overlaps pseudogene [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000449219.3 SEPTIN7P13-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000449219.3 SEPTIN7P13-202

Summary

About Us

Get help

Our sister sites

Follow us