Transcript: ENST00000449012.2

Description

novel transcript

Location

Chromosome 1: 234,655,786-234,681,122 forward strand.

About this transcript

This transcript has 3 exons and maps to 92 oligo probes.

Gene

This transcript is a product of gene ENSG00000228044.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000449012.2	-	624	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000796482.1	-	992	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000717087.1	-	1480	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000796503.1	-	1455	No protein	-	lncRNA	-	-
ENST00000796517.1	-	1390	No protein	-	lncRNA	-	-
ENST00000417805.1	-	1373	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000796497.1	-	1289	No protein	-	lncRNA	-	-
ENST00000796493.1	-	1263	No protein	-	lncRNA	-	-
ENST00000796483.1	-	1245	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000796494.1	-	1166	No protein	-	lncRNA	-	-
ENST00000796501.1	-	1144	No protein	-	lncRNA	-	-
ENST00000796500.1	-	1086	No protein	-	lncRNA	-	-
ENST00000796498.1	-	1083	No protein	-	lncRNA	-	-
ENST00000664534.2	-	1048	No protein	-	lncRNA	-	-
ENST00000717088.1	-	987	No protein	-	lncRNA	-	-
ENST00000796499.1	-	970	No protein	-	lncRNA	-	-
ENST00000796508.1	-	950	No protein	-	lncRNA	-	-
ENST00000796488.1	-	946	No protein	-	lncRNA	-	-
ENST00000441360.1	-	933	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000796506.1	-	921	No protein	-	lncRNA	-	-
ENST00000796484.1	-	913	No protein	-	lncRNA	-	-
ENST00000796485.1	-	912	No protein	-	lncRNA	-	-
ENST00000796495.1	-	900	No protein	-	lncRNA	-	-
ENST00000796514.1	-	891	No protein	-	lncRNA	-	-
ENST00000796518.1	-	887	No protein	-	lncRNA	-	-
ENST00000796519.1	-	873	No protein	-	lncRNA	-	-
ENST00000796502.1	-	825	No protein	-	lncRNA	-	-
ENST00000796520.1	-	814	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000796487.1	-	797	No protein	-	lncRNA	-	-
ENST00000796486.1	-	793	No protein	-	lncRNA	-	-
ENST00000796490.1	-	760	No protein	-	lncRNA	-	-
ENST00000796507.1	-	755	No protein	-	lncRNA	-	-
ENST00000796512.1	-	749	No protein	-	lncRNA	-	-
ENST00000796522.1	-	747	No protein	-	lncRNA	-	-
ENST00000796524.1	-	729	No protein	-	lncRNA	-	-
ENST00000796492.1	-	725	No protein	-	lncRNA	-	-
ENST00000796504.1	-	723	No protein	-	lncRNA	-	-
ENST00000796509.1	-	720	No protein	-	lncRNA	-	-
ENST00000796513.1	-	716	No protein	-	lncRNA	-	-
ENST00000796510.1	-	714	No protein	-	lncRNA	-	-
ENST00000717086.1	-	711	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000796491.1	-	668	No protein	-	lncRNA	-	-
ENST00000796489.1	-	661	No protein	-	lncRNA	-	-
ENST00000796516.1	-	641	No protein	-	lncRNA	-	-
ENST00000453568.1	-	631	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000796511.1	-	626	No protein	-	lncRNA	-	-
ENST00000796496.1	-	597	No protein	-	lncRNA	-	-
ENST00000796505.1	-	582	No protein	-	lncRNA	-	-
ENST00000796523.1	-	572	No protein	-	lncRNA	-	-
ENST00000665192.2	-	526	No protein	-	lncRNA	-	-
ENST00000796515.1	-	451	No protein	-	lncRNA	-	-
ENST00000796521.1	-	361	No protein	-	lncRNA	-	-
ENST00000796525.1	-	325	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 624 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000449012.2

Type

Retained intron

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000449012.2

Summary

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Transcript: ENST00000449012.2

Summary

About Us

Get help

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