Transcript: ENST00000449003.8

Description

novel transcript

Location

Chromosome 3: 197,614,027-197,627,908 reverse strand.

About this transcript

This transcript has 7 exons and maps to 763 oligo probes.

Gene

This transcript is a product of gene ENSG00000291091.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000449003.8	-	2495	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000751206.1	-	2068	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000751208.1	-	3751	No protein	-	lncRNA	-	-
ENST00000751258.1	-	2611	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000700758.2	-	2344	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000751255.1	-	2260	No protein	-	lncRNA	-	-
ENST00000751267.1	-	2235	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000418868.8	-	2107	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000686003.3	-	2050	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000751239.1	-	1999	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000751219.1	-	1993	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000751242.1	-	1978	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000751237.1	-	1967	No protein	-	lncRNA	-	-
ENST00000751213.1	-	1936	No protein	-	lncRNA	-	-
ENST00000751233.1	-	1827	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000702152.2	-	1807	No protein	-	lncRNA	-	-
ENST00000751244.1	-	1805	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000751230.1	-	1777	No protein	-	lncRNA	-	-
ENST00000751225.1	-	1769	No protein	-	lncRNA	-	-
ENST00000751271.1	-	1747	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000751224.1	-	1739	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000751207.1	-	1731	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000751266.1	-	1686	No protein	-	lncRNA	-	-
ENST00000751215.1	-	1657	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000453454.6	-	1649	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000751226.1	-	1649	No protein	-	lncRNA	-	-
ENST00000701851.2	-	1642	No protein	-	lncRNA	-	-
ENST00000751263.1	-	1626	No protein	-	lncRNA	-	-
ENST00000751222.1	-	1621	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000690701.1	-	1605	No protein	-	lncRNA	-	-
ENST00000751240.1	-	1588	No protein	-	lncRNA	-	-
ENST00000751246.1	-	1569	No protein	-	lncRNA	-	-
ENST00000685536.3	-	1546	No protein	-	lncRNA	-	-
ENST00000751245.1	-	1544	No protein	-	lncRNA	-	-
ENST00000751221.1	-	1539	No protein	-	lncRNA	-	-
ENST00000701522.2	-	1520	No protein	-	lncRNA	-	-
ENST00000751232.1	-	1520	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000751236.1	-	1512	No protein	-	lncRNA	-	-
ENST00000751214.1	-	1507	No protein	-	lncRNA	-	-
ENST00000751243.1	-	1495	No protein	-	lncRNA	-	-
ENST00000751247.1	-	1493	No protein	-	lncRNA	-	-
ENST00000751241.1	-	1485	No protein	-	lncRNA	-	-
ENST00000688268.3	-	1478	No protein	-	lncRNA	-	-
ENST00000751229.1	-	1475	No protein	-	lncRNA	-	-
ENST00000751227.1	-	1449	No protein	-	lncRNA	-	-
ENST00000751234.1	-	1443	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000751260.1	-	1440	No protein	-	lncRNA	-	-
ENST00000701021.1	-	1434	No protein	-	lncRNA	-	-
ENST00000751210.1	-	1432	No protein	-	lncRNA	-	-
ENST00000751265.1	-	1413	No protein	-	lncRNA	-	-
ENST00000751249.1	-	1411	No protein	-	lncRNA	-	-
ENST00000751256.1	-	1410	No protein	-	lncRNA	-	-
ENST00000685331.2	-	1404	No protein	-	lncRNA	-	-
ENST00000751209.1	-	1392	No protein	-	lncRNA	-	-
ENST00000751238.1	-	1382	No protein	-	lncRNA	-	-
ENST00000751261.1	-	1369	No protein	-	lncRNA	-	-
ENST00000751250.1	-	1366	No protein	-	lncRNA	-	-
ENST00000685600.2	-	1329	No protein	-	lncRNA	-	-
ENST00000751231.1	-	1329	No protein	-	lncRNA	-	-
ENST00000751223.1	-	1326	No protein	-	lncRNA	-	-
ENST00000751268.1	-	1321	No protein	-	lncRNA	-	-
ENST00000414207.5	-	1286	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000751251.1	-	1278	No protein	-	lncRNA	-	-
ENST00000751235.1	-	1270	No protein	-	lncRNA	-	-
ENST00000751257.1	-	1262	No protein	-	lncRNA	-	-
ENST00000751228.1	-	1236	No protein	-	lncRNA	-	-
ENST00000440535.6	-	1232	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000751262.1	-	1230	No protein	-	lncRNA	-	-
ENST00000701709.2	-	1229	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000751248.1	-	1217	No protein	-	lncRNA	-	-
ENST00000751264.1	-	1184	No protein	-	lncRNA	-	-
ENST00000701105.2	-	1151	No protein	-	lncRNA	-	-
ENST00000689038.2	-	1142	No protein	-	lncRNA	-	-
ENST00000751272.1	-	1133	No protein	-	lncRNA	-	-
ENST00000751259.1	-	1078	No protein	-	lncRNA	-	-
ENST00000751216.1	-	1074	No protein	-	lncRNA	-	-
ENST00000751212.1	-	1046	No protein	-	lncRNA	-	-
ENST00000689716.2	-	1004	No protein	-	lncRNA	-	-
ENST00000751252.1	-	983	No protein	-	lncRNA	-	-
ENST00000751211.1	-	972	No protein	-	lncRNA	-	-
ENST00000751217.1	-	856	No protein	-	lncRNA	-	-
ENST00000437008.5	-	838	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000751218.1	-	778	No protein	-	lncRNA	-	-
ENST00000751254.1	-	670	No protein	-	lncRNA	-	-
ENST00000751269.1	-	655	No protein	-	lncRNA	-	-
ENST00000751220.1	-	653	No protein	-	lncRNA	-	-
ENST00000751253.1	-	604	No protein	-	lncRNA	-	-
ENST00000751270.1	-	466	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 2,495 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000449003.8

Type

Retained intron

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Annotation Attributes

overlaps pseudogene [Definitions]

Transcript: ENST00000449003.8

Summary

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Transcript: ENST00000449003.8

Summary

About Us

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