Transcript: ENST00000445073.1 SCMH1-DT-203

Description

SCMH1 divergent transcript [Source:HGNC Symbol;Acc:HGNC:55675]

Location

Chromosome 1: 41,242,575-41,284,861 forward strand.

About this transcript

This transcript has 2 exons and maps to 103 oligo probes.

Gene

This transcript is a product of gene ENSG00000235358.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000657314.1	SCMH1-DT-204	4437	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670398.1	SCMH1-DT-205	1066	No protein	-	lncRNA	-	-
ENST00000847546.1	SCMH1-DT-218	1025	No protein	-	lncRNA	-	-
ENST00000847551.1	SCMH1-DT-223	942	No protein	-	lncRNA	-	-
ENST00000847557.1	SCMH1-DT-229	892	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000847553.1	SCMH1-DT-225	798	No protein	-	lncRNA	-	-
ENST00000422305.2	SCMH1-DT-201	794	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000847537.1	SCMH1-DT-209	747	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000847550.1	SCMH1-DT-222	713	No protein	-	lncRNA	-	-
ENST00000445073.1	SCMH1-DT-203	709	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000847535.1	SCMH1-DT-207	690	No protein	-	lncRNA	-	-
ENST00000425554.2	SCMH1-DT-202	677	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000847552.1	SCMH1-DT-224	673	No protein	-	lncRNA	-	-
ENST00000847540.1	SCMH1-DT-212	662	No protein	-	lncRNA	-	-
ENST00000847536.1	SCMH1-DT-208	624	No protein	-	lncRNA	-	-
ENST00000847538.1	SCMH1-DT-210	615	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000847541.1	SCMH1-DT-213	581	No protein	-	lncRNA	-	-
ENST00000847534.1	SCMH1-DT-206	562	No protein	-	lncRNA	-	-
ENST00000847543.1	SCMH1-DT-215	559	No protein	-	lncRNA	-	-
ENST00000847544.1	SCMH1-DT-216	555	No protein	-	lncRNA	-	-
ENST00000847558.1	SCMH1-DT-230	545	No protein	-	lncRNA	-	-
ENST00000847548.1	SCMH1-DT-220	544	No protein	-	lncRNA	-	-
ENST00000847549.1	SCMH1-DT-221	542	No protein	-	lncRNA	-	-
ENST00000847542.1	SCMH1-DT-214	514	No protein	-	lncRNA	-	-
ENST00000847554.1	SCMH1-DT-226	511	No protein	-	lncRNA	-	-
ENST00000847556.1	SCMH1-DT-228	478	No protein	-	lncRNA	-	-
ENST00000847545.1	SCMH1-DT-217	466	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000847539.1	SCMH1-DT-211	462	No protein	-	lncRNA	-	-
ENST00000847547.1	SCMH1-DT-219	441	No protein	-	lncRNA	-	-
ENST00000847555.1	SCMH1-DT-227	310	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 709 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000445073.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000445073.1 SCMH1-DT-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000445073.1 SCMH1-DT-203

Summary

About Us

Get help

Our sister sites

Follow us