Transcript: ENST00000435731.6 SDHAP1-207

Description

SDHA pseudogene 1 [Source:NCBI gene (formerly Entrezgene);Acc:255812]

Gene Synonyms

SDHAL1, SDHALP1

Location

Chromosome 3: 195,959,281-195,990,325 reverse strand.

About this transcript

This transcript has 14 exons, is associated with 20828 variant alleles and maps to 1196 oligo probes.

Gene

This transcript is a product of gene ENSG00000290763.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000427415.2	SDHAP1-205	2622	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000457601.1	SDHAP1-208	560	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000435731.6	SDHAP1-207	2642	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000774717.1	SDHAP1-266	3127	No protein	-	lncRNA	-	-
ENST00000774660.1	SDHAP1-209	2750	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000774674.1	SDHAP1-223	2669	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000774668.1	SDHAP1-217	2636	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000774681.1	SDHAP1-230	2636	No protein	-	lncRNA	-	-
ENST00000774701.1	SDHAP1-250	2595	No protein	-	lncRNA	-	-
ENST00000774673.1	SDHAP1-222	2589	No protein	-	lncRNA	-	-
ENST00000774676.1	SDHAP1-225	2583	No protein	-	lncRNA	-	-
ENST00000774706.1	SDHAP1-255	2572	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000774757.1	SDHAP1-306	2510	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000427841.5	SDHAP1-206	2491	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000774666.1	SDHAP1-215	2479	No protein	-	lncRNA	-	-
ENST00000774671.1	SDHAP1-220	2442	No protein	-	lncRNA	-	-
ENST00000774685.1	SDHAP1-234	2435	No protein	-	lncRNA	-	-
ENST00000774695.1	SDHAP1-244	2391	No protein	-	lncRNA	-	-
ENST00000774670.1	SDHAP1-219	2387	No protein	-	lncRNA	-	-
ENST00000427149.6	SDHAP1-204	2358	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000774678.1	SDHAP1-227	2356	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000774698.1	SDHAP1-247	2336	No protein	-	lncRNA	-	-
ENST00000774661.1	SDHAP1-210	2325	No protein	-	lncRNA	-	-
ENST00000774703.1	SDHAP1-252	2322	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000774693.1	SDHAP1-242	2317	No protein	-	lncRNA	-	-
ENST00000774689.1	SDHAP1-238	2298	No protein	-	lncRNA	-	-
ENST00000774702.1	SDHAP1-251	2298	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000774679.1	SDHAP1-228	2280	No protein	-	lncRNA	-	-
ENST00000774686.1	SDHAP1-235	2262	No protein	-	lncRNA	-	-
ENST00000774691.1	SDHAP1-240	2260	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000774710.1	SDHAP1-259	2195	No protein	-	lncRNA	-	-
ENST00000774667.1	SDHAP1-216	2188	No protein	-	lncRNA	-	-
ENST00000774683.1	SDHAP1-232	2178	No protein	-	lncRNA	-	-
ENST00000413474.6	SDHAP1-203	2173	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000774664.1	SDHAP1-213	2164	No protein	-	lncRNA	-	-
ENST00000774675.1	SDHAP1-224	2158	No protein	-	lncRNA	-	-
ENST00000354559.10	SDHAP1-202	2156	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000774711.1	SDHAP1-260	2090	No protein	-	lncRNA	-	-
ENST00000774694.1	SDHAP1-243	2063	No protein	-	lncRNA	-	-
ENST00000774684.1	SDHAP1-233	2061	No protein	-	lncRNA	-	-
ENST00000774700.1	SDHAP1-249	2054	No protein	-	lncRNA	-	-
ENST00000774662.1	SDHAP1-211	2049	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000774663.1	SDHAP1-212	2043	No protein	-	lncRNA	-	-
ENST00000774696.1	SDHAP1-245	2041	No protein	-	lncRNA	-	-
ENST00000774692.1	SDHAP1-241	2014	No protein	-	lncRNA	-	-
ENST00000774680.1	SDHAP1-229	2009	No protein	-	lncRNA	-	-
ENST00000774744.1	SDHAP1-293	1957	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000774716.1	SDHAP1-265	1942	No protein	-	lncRNA	-	-
ENST00000774672.1	SDHAP1-221	1939	No protein	-	lncRNA	-	-
ENST00000774707.1	SDHAP1-256	1928	No protein	-	lncRNA	-	-
ENST00000774724.1	SDHAP1-273	1928	No protein	-	lncRNA	-	-
ENST00000774704.1	SDHAP1-253	1900	No protein	-	lncRNA	-	-
ENST00000774677.1	SDHAP1-226	1899	No protein	-	lncRNA	-	-
ENST00000774697.1	SDHAP1-246	1888	No protein	-	lncRNA	-	-
ENST00000774712.1	SDHAP1-261	1773	No protein	-	lncRNA	-	-
ENST00000774708.1	SDHAP1-257	1758	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000774737.1	SDHAP1-286	1753	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000774719.1	SDHAP1-268	1735	No protein	-	lncRNA	-	-
ENST00000774754.1	SDHAP1-303	1711	No protein	-	lncRNA	-	-
ENST00000774732.1	SDHAP1-281	1705	No protein	-	lncRNA	-	-
ENST00000774669.1	SDHAP1-218	1697	No protein	-	lncRNA	-	-
ENST00000774715.1	SDHAP1-264	1666	No protein	-	lncRNA	-	-
ENST00000774687.1	SDHAP1-236	1650	No protein	-	lncRNA	-	-
ENST00000774738.1	SDHAP1-287	1627	No protein	-	lncRNA	-	-
ENST00000774762.1	SDHAP1-311	1609	No protein	-	lncRNA	-	-
ENST00000774728.1	SDHAP1-277	1588	No protein	-	lncRNA	-	-
ENST00000774723.1	SDHAP1-272	1585	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000774713.1	SDHAP1-262	1575	No protein	-	lncRNA	-	-
ENST00000774733.1	SDHAP1-282	1561	No protein	-	lncRNA	-	-
ENST00000774709.1	SDHAP1-258	1559	No protein	-	lncRNA	-	-
ENST00000774705.1	SDHAP1-254	1499	No protein	-	lncRNA	-	-
ENST00000774759.1	SDHAP1-308	1495	No protein	-	lncRNA	-	-
ENST00000774742.1	SDHAP1-291	1490	No protein	-	lncRNA	-	-
ENST00000774736.1	SDHAP1-285	1468	No protein	-	lncRNA	-	-
ENST00000774750.1	SDHAP1-299	1466	No protein	-	lncRNA	-	-
ENST00000774729.1	SDHAP1-278	1463	No protein	-	lncRNA	-	-
ENST00000774755.1	SDHAP1-304	1452	No protein	-	lncRNA	-	-
ENST00000774764.1	SDHAP1-313	1445	No protein	-	lncRNA	-	-
ENST00000774720.1	SDHAP1-269	1435	No protein	-	lncRNA	-	-
ENST00000774731.1	SDHAP1-280	1418	No protein	-	lncRNA	-	-
ENST00000774745.1	SDHAP1-294	1413	No protein	-	lncRNA	-	-
ENST00000774778.1	SDHAP1-324	1398	No protein	-	lncRNA	-	-
ENST00000774734.1	SDHAP1-283	1394	No protein	-	lncRNA	-	-
ENST00000774752.1	SDHAP1-301	1370	No protein	-	lncRNA	-	-
ENST00000774741.1	SDHAP1-290	1367	No protein	-	lncRNA	-	-
ENST00000774699.1	SDHAP1-248	1355	No protein	-	lncRNA	-	-
ENST00000774735.1	SDHAP1-284	1349	No protein	-	lncRNA	-	-
ENST00000774730.1	SDHAP1-279	1322	No protein	-	lncRNA	-	-
ENST00000774725.1	SDHAP1-274	1311	No protein	-	lncRNA	-	-
ENST00000774721.1	SDHAP1-270	1301	No protein	-	lncRNA	-	-
ENST00000774760.1	SDHAP1-309	1301	No protein	-	lncRNA	-	-
ENST00000774718.1	SDHAP1-267	1299	No protein	-	lncRNA	-	-
ENST00000774743.1	SDHAP1-292	1298	No protein	-	lncRNA	-	-
ENST00000774747.1	SDHAP1-296	1282	No protein	-	lncRNA	-	-
ENST00000774779.1	SDHAP1-325	1261	No protein	-	lncRNA	-	-
ENST00000774726.1	SDHAP1-275	1252	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000774756.1	SDHAP1-305	1242	No protein	-	lncRNA	-	-
ENST00000774761.1	SDHAP1-310	1229	No protein	-	lncRNA	-	-
ENST00000774751.1	SDHAP1-300	1209	No protein	-	lncRNA	-	-
ENST00000774765.1	SDHAP1-314	1199	No protein	-	lncRNA	-	-
ENST00000774777.1	SDHAP1-323	1192	No protein	-	lncRNA	-	-
ENST00000774748.1	SDHAP1-297	1191	No protein	-	lncRNA	-	-
ENST00000774763.1	SDHAP1-312	1189	No protein	-	lncRNA	-	-
ENST00000774746.1	SDHAP1-295	1180	No protein	-	lncRNA	-	-
ENST00000774722.1	SDHAP1-271	1152	No protein	-	lncRNA	-	-
ENST00000774714.1	SDHAP1-263	1091	No protein	-	lncRNA	-	-
ENST00000774753.1	SDHAP1-302	1087	No protein	-	lncRNA	-	-
ENST00000774749.1	SDHAP1-298	1024	No protein	-	lncRNA	-	-
ENST00000774682.1	SDHAP1-231	1007	No protein	-	lncRNA	-	-
ENST00000774727.1	SDHAP1-276	938	No protein	-	lncRNA	-	-
ENST00000774739.1	SDHAP1-288	938	No protein	-	lncRNA	-	-
ENST00000774665.1	SDHAP1-214	873	No protein	-	lncRNA	-	-
ENST00000774766.1	SDHAP1-315	860	No protein	-	lncRNA	-	-
ENST00000774688.1	SDHAP1-237	856	No protein	-	lncRNA	-	-
ENST00000774767.1	SDHAP1-316	854	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000774758.1	SDHAP1-307	832	No protein	-	lncRNA	-	-
ENST00000774770.1	SDHAP1-317	772	No protein	-	lncRNA	-	-
ENST00000774740.1	SDHAP1-289	762	No protein	-	lncRNA	-	-
ENST00000774775.1	SDHAP1-321	738	No protein	-	lncRNA	-	-
ENST00000774690.1	SDHAP1-239	706	No protein	-	lncRNA	-	-
ENST00000774774.1	SDHAP1-320	687	No protein	-	lncRNA	-	-
ENST00000774776.1	SDHAP1-322	628	No protein	-	lncRNA	-	-
ENST00000774771.1	SDHAP1-318	620	No protein	-	lncRNA	-	-
ENST00000774782.1	SDHAP1-328	608	No protein	-	lncRNA	-	-
ENST00000774781.1	SDHAP1-327	580	No protein	-	lncRNA	-	-
ENST00000774780.1	SDHAP1-326	571	No protein	-	lncRNA	-	-
ENST00000774773.1	SDHAP1-319	566	No protein	-	lncRNA	-	-
ENST00000774783.1	SDHAP1-329	374	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 14, Coding exons: 0, Transcript length: 2,642 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000435731.6

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Annotation Attributes

overlaps pseudogene [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000435731.6 SDHAP1-207

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Transcript: ENST00000435731.6 SDHAP1-207

Summary

About Us

Get help

Our sister sites

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