Transcript: ENST00000426393.6 FOXD3-AS1-202

Description

FOXD3 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40241]

Gene Synonyms

FAST, PASFOXD3

Location

Chromosome 1: 63,320,884-63,321,665 reverse strand.

About this transcript

This transcript has 3 exons and maps to 98 oligo probes.

Gene

This transcript is a product of gene ENSG00000230798.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000717714.1	FOXD3-AS1-223	503	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000690254.2	FOXD3-AS1-214	1847	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000686970.2	FOXD3-AS1-210	1462	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000686639.2	FOXD3-AS1-209	1448	No protein	-	lncRNA	-	-
ENST00000688951.2	FOXD3-AS1-211	1415	No protein	-	lncRNA	-	-
ENST00000717913.1	FOXD3-AS1-251	1367	No protein	-	lncRNA	-	-
ENST00000689123.2	FOXD3-AS1-213	1278	No protein	-	lncRNA	-	-
ENST00000717912.1	FOXD3-AS1-250	1248	No protein	-	lncRNA	-	-
ENST00000686286.1	FOXD3-AS1-207	1247	No protein	-	lncRNA	-	-
ENST00000690333.2	FOXD3-AS1-215	1047	No protein	-	lncRNA	-	-
ENST00000418244.7	FOXD3-AS1-201	1018	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000717766.1	FOXD3-AS1-236	989	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717765.1	FOXD3-AS1-235	984	No protein	-	lncRNA	-	-
ENST00000717850.1	FOXD3-AS1-247	982	No protein	-	lncRNA	-	-
ENST00000717768.1	FOXD3-AS1-238	979	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717845.1	FOXD3-AS1-242	977	No protein	-	lncRNA	-	-
ENST00000686369.2	FOXD3-AS1-208	976	No protein	-	lncRNA	-	-
ENST00000691303.2	FOXD3-AS1-217	883	No protein	-	lncRNA	-	-
ENST00000685680.3	FOXD3-AS1-206	870	No protein	-	lncRNA	-	-
ENST00000717916.1	FOXD3-AS1-254	866	No protein	-	lncRNA	-	-
ENST00000717911.1	FOXD3-AS1-249	849	No protein	-	lncRNA	-	-
ENST00000717849.1	FOXD3-AS1-246	841	No protein	-	lncRNA	-	-
ENST00000717748.1	FOXD3-AS1-233	840	No protein	-	lncRNA	-	-
ENST00000717914.1	FOXD3-AS1-252	790	No protein	-	lncRNA	-	-
ENST00000717847.1	FOXD3-AS1-244	782	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717743.1	FOXD3-AS1-228	775	No protein	-	lncRNA	-	-
ENST00000690549.3	FOXD3-AS1-216	740	No protein	-	lncRNA	-	-
ENST00000717746.1	FOXD3-AS1-231	730	No protein	-	lncRNA	-	-
ENST00000717910.1	FOXD3-AS1-248	729	No protein	-	lncRNA	-	-
ENST00000717742.1	FOXD3-AS1-227	718	No protein	-	lncRNA	-	-
ENST00000431294.8	FOXD3-AS1-204	704	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000717740.1	FOXD3-AS1-226	697	No protein	-	lncRNA	-	-
ENST00000689015.2	FOXD3-AS1-212	687	No protein	-	lncRNA	-	-
ENST00000717739.1	FOXD3-AS1-225	683	No protein	-	lncRNA	-	-
ENST00000717749.1	FOXD3-AS1-234	679	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717915.1	FOXD3-AS1-253	657	No protein	-	lncRNA	-	-
ENST00000717747.1	FOXD3-AS1-232	655	No protein	-	lncRNA	-	-
ENST00000717767.1	FOXD3-AS1-237	641	No protein	-	lncRNA	-	-
ENST00000717744.1	FOXD3-AS1-229	627	No protein	-	lncRNA	-	-
ENST00000691511.1	FOXD3-AS1-218	615	No protein	-	lncRNA	-	-
ENST00000717771.1	FOXD3-AS1-241	604	No protein	-	lncRNA	-	-
ENST00000717848.1	FOXD3-AS1-245	600	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000427268.2	FOXD3-AS1-203	600	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000449386.7	FOXD3-AS1-205	574	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000717745.1	FOXD3-AS1-230	540	No protein	-	lncRNA	-	-
ENST00000717846.1	FOXD3-AS1-243	531	No protein	-	lncRNA	-	-
ENST00000717713.1	FOXD3-AS1-222	497	No protein	-	lncRNA	-	-
ENST00000717770.1	FOXD3-AS1-240	490	No protein	-	lncRNA	-	-
ENST00000717712.1	FOXD3-AS1-221	475	No protein	-	lncRNA	-	-
ENST00000692879.1	FOXD3-AS1-219	460	No protein	-	lncRNA	-	-
ENST00000717769.1	FOXD3-AS1-239	451	No protein	-	lncRNA	-	-
ENST00000426393.6	FOXD3-AS1-202	449	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000697579.1	FOXD3-AS1-220	430	No protein	-	lncRNA	-	-
ENST00000717715.1	FOXD3-AS1-224	423	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 449 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000426393.6

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000426393.6 FOXD3-AS1-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000426393.6 FOXD3-AS1-202

Summary

About Us

Get help

Our sister sites

Follow us