Transcript: ENST00000425566.1 RPL23AP87-203

Description

ribosomal protein L23a pseudogene 87 [Source:NCBI gene (formerly Entrezgene);Acc:388574]

Location

Chromosome 17: 83,226,897-83,240,804 forward strand.

About this transcript

This transcript has 4 exons, is associated with 5885 variant alleles and maps to 1239 oligo probes.

Gene

This transcript is a product of gene ENSG00000293087.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000425566.1	RPL23AP87-203	2256	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000779488.1	RPL23AP87-210	2504	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000779487.1	RPL23AP87-209	2369	No protein	-	lncRNA	-	-
ENST00000779486.1	RPL23AP87-208	2281	No protein	-	lncRNA	-	-
ENST00000779484.1	RPL23AP87-206	1369	No protein	-	lncRNA	-	-
ENST00000779482.1	RPL23AP87-204	1049	No protein	-	lncRNA	-	-
ENST00000779485.1	RPL23AP87-207	845	No protein	-	lncRNA	-	-
ENST00000779483.1	RPL23AP87-205	755	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 2,256 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000425566.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

overlaps pseudogene [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000425566.1 RPL23AP87-203

Summary

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Transcript: ENST00000425566.1 RPL23AP87-203

Summary

About Us

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