Transcript: ENST00000418756.6 PMS2P3-203

Description

PMS1 homolog 2, mismatch repair system component pseudogene 3 [Source:HGNC Symbol;Acc:HGNC:9128]

Gene Synonyms

PMS2L3, PMS2L9, PMS5, PMSR3

Location

Chromosome 7: 75,507,750-75,528,123 reverse strand.

About this transcript

This transcript has 9 exons and maps to 1508 oligo probes.

Gene

This transcript is a product of gene ENSG00000291092.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000438326.2	PMS2P3-205	229	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000845724.1	PMS2P3-210	1122	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000845725.1	PMS2P3-211	1645	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000418756.6	PMS2P3-203	1493	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000845734.1	PMS2P3-220	1469	No protein	-	lncRNA	-	-
ENST00000845742.1	PMS2P3-228	1456	No protein	-	lncRNA	-	-
ENST00000845735.1	PMS2P3-221	1341	No protein	-	lncRNA	-	-
ENST00000394921.8	PMS2P3-202	1316	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000845727.1	PMS2P3-213	1301	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000845739.1	PMS2P3-225	1287	No protein	-	lncRNA	-	-
ENST00000845743.1	PMS2P3-229	1281	No protein	-	lncRNA	-	-
ENST00000845740.1	PMS2P3-226	1265	No protein	-	lncRNA	-	-
ENST00000533167.6	PMS2P3-206	1252	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000845732.1	PMS2P3-218	1246	No protein	-	lncRNA	-	-
ENST00000845736.1	PMS2P3-222	1201	No protein	-	lncRNA	-	-
ENST00000845738.1	PMS2P3-224	1182	No protein	-	lncRNA	-	-
ENST00000845748.1	PMS2P3-232	1170	No protein	-	lncRNA	-	-
ENST00000845747.1	PMS2P3-231	1154	No protein	-	lncRNA	-	-
ENST00000845726.1	PMS2P3-212	1150	No protein	-	lncRNA	-	-
ENST00000845737.1	PMS2P3-223	1146	No protein	-	lncRNA	-	-
ENST00000845969.1	PMS2P3-237	1144	No protein	-	lncRNA	-	-
ENST00000845728.1	PMS2P3-214	1089	No protein	-	lncRNA	-	-
ENST00000845731.1	PMS2P3-217	1069	No protein	-	lncRNA	-	-
ENST00000702274.2	PMS2P3-209	1052	No protein	-	lncRNA	-	-
ENST00000845741.1	PMS2P3-227	1010	No protein	-	lncRNA	-	-
ENST00000430602.5	PMS2P3-204	1005	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000845733.1	PMS2P3-219	954	No protein	-	lncRNA	-	-
ENST00000691440.1	PMS2P3-207	949	No protein	-	lncRNA	-	-
ENST00000845730.1	PMS2P3-216	875	No protein	-	lncRNA	-	-
ENST00000693762.1	PMS2P3-208	868	No protein	-	lncRNA	-	-
ENST00000845746.1	PMS2P3-230	833	No protein	-	lncRNA	-	-
ENST00000845878.1	PMS2P3-233	674	No protein	-	lncRNA	-	-
ENST00000845952.1	PMS2P3-235	673	No protein	-	lncRNA	-	-
ENST00000845951.1	PMS2P3-234	599	No protein	-	lncRNA	-	-
ENST00000845970.1	PMS2P3-238	549	No protein	-	lncRNA	-	-
ENST00000845729.1	PMS2P3-215	519	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000845973.1	PMS2P3-240	493	No protein	-	lncRNA	-	-
ENST00000845972.1	PMS2P3-239	433	No protein	-	lncRNA	-	-
ENST00000845974.1	PMS2P3-241	427	No protein	-	lncRNA	-	-
ENST00000845954.1	PMS2P3-236	423	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 9, Coding exons: 0, Transcript length: 1,493 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000418756.6

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Annotation Attributes

overlaps pseudogene [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000418756.6 PMS2P3-203

Summary

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Transcript: ENST00000418756.6 PMS2P3-203

Summary

About Us

Get help

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