Transcript: ENST00000395805.6 CAPRIN2-202

Description

caprin family member 2 [Source:HGNC Symbol;Acc:HGNC:21259]

Gene Synonyms

C1QDC1, CAPRIN-2, EEG1, FLJ11391, FLJ22569, RNG140

Location

Chromosome 12: 30,709,554-30,754,311 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 20 domains and features and maps to 769 oligo probes.

Gene

This transcript is a product of gene ENSG00000110888.20 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000695402.1	CAPRIN2-244	3727	1045aa	ENSP00000511883.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91677	F5H5J8	NM_001385503.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENST00000954210.1	CAPRIN2-274	4604	941aa	ENSP00000624269.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000921383.1	CAPRIN2-266	4487	962aa	ENSP00000591442.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000687797.1	CAPRIN2-222	4484	1127aa	ENSP00000510623.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6IMN6-1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENST00000298892.9	CAPRIN2-201	4334	1077aa	ENSP00000298892.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8720	Q6IMN6-2	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000395805.6	CAPRIN2-202	4156	905aa	ENSP00000379150.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55816	Q6IMN6-10	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000921384.1	CAPRIN2-267	3850	990aa	ENSP00000591443.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000954209.1	CAPRIN2-273	3825	1046aa	ENSP00000624268.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91678	-	-	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENST00000954207.1	CAPRIN2-271	3794	1044aa	ENSP00000624266.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENST00000954215.1	CAPRIN2-279	3777	1045aa	ENSP00000624274.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91677	-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENST00000893352.1	CAPRIN2-255	3772	1046aa	ENSP00000563411.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91678	-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENST00000893343.1	CAPRIN2-246	3760	1025aa	ENSP00000563402.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91676	-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000893344.1	CAPRIN2-247	3726	1046aa	ENSP00000563403.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91678	-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENST00000954211.1	CAPRIN2-275	3725	1045aa	ENSP00000624270.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENST00000954221.1	CAPRIN2-285	3721	1076aa	ENSP00000624280.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000695400.1	CAPRIN2-243	3713	1046aa	ENSP00000511879.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91678	A0A8I5KZC0	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENST00000893345.1	CAPRIN2-248	3707	1045aa	ENSP00000563404.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91677	-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENST00000542550.6	CAPRIN2-213	3687	1045aa	ENSP00000443353.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91677	F5H5J8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000921380.1	CAPRIN2-263	3673	1042aa	ENSP00000591439.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000893350.1	CAPRIN2-253	3668	1076aa	ENSP00000563409.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000954205.1	CAPRIN2-269	3664	1023aa	ENSP00000624264.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000893349.1	CAPRIN2-252	3654	1046aa	ENSP00000563408.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91678	-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENST00000893353.1	CAPRIN2-256	3649	1045aa	ENSP00000563412.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91677	-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENST00000921374.1	CAPRIN2-257	3639	1010aa	ENSP00000591433.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000692932.1	CAPRIN2-228	3619	1046aa	ENSP00000510778.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91678	A0A8I5KZC0	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENST00000921382.1	CAPRIN2-265	3612	1010aa	ENSP00000591441.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000540584.2	CAPRIN2-211	3611	1025aa	ENSP00000441005.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91676	F5GXI7	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000954214.1	CAPRIN2-278	3610	997aa	ENSP00000624273.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000893347.1	CAPRIN2-250	3603	1010aa	ENSP00000563406.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000921375.1	CAPRIN2-258	3595	996aa	ENSP00000591434.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000893351.1	CAPRIN2-254	3581	1025aa	ENSP00000563410.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91676	-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000540436.6	CAPRIN2-210	3580	1025aa	ENSP00000442295.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91676	F5GXI7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000921381.1	CAPRIN2-264	3579	1015aa	ENSP00000591440.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000954216.1	CAPRIN2-280	3575	990aa	ENSP00000624275.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000954204.1	CAPRIN2-268	3573	961aa	ENSP00000624263.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000695370.1	CAPRIN2-237	3561	992aa	ENSP00000511843.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A8Q3SHV1	-	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000921379.1	CAPRIN2-262	3558	990aa	ENSP00000591438.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000893348.1	CAPRIN2-251	3551	1011aa	ENSP00000563407.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000954212.1	CAPRIN2-276	3540	961aa	ENSP00000624271.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91675	-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000921378.1	CAPRIN2-261	3539	961aa	ENSP00000591437.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91675	-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000417045.5	CAPRIN2-203	3535	960aa	ENSP00000391479.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41766	Q6IMN6-3	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000893342.1	CAPRIN2-245	3533	961aa	ENSP00000563401.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91675	-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000954213.1	CAPRIN2-277	3524	962aa	ENSP00000624272.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000690126.1	CAPRIN2-226	3507	627aa	ENSP00000510009.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91671	A0A8I5KSM9	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000954219.1	CAPRIN2-283	3498	997aa	ENSP00000624278.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000921376.1	CAPRIN2-259	3492	940aa	ENSP00000591435.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000684863.1	CAPRIN2-220	3477	794aa	ENSP00000510181.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91672	Q6IMN6-4	-	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000954208.1	CAPRIN2-272	3477	962aa	ENSP00000624267.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000954206.1	CAPRIN2-270	3475	961aa	ENSP00000624265.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000893346.1	CAPRIN2-249	3460	962aa	ENSP00000563405.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000954222.1	CAPRIN2-286	3456	997aa	ENSP00000624281.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000695374.1	CAPRIN2-241	3452	1050aa	ENSP00000511847.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A8Q3WKF3	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000954218.1	CAPRIN2-282	3450	941aa	ENSP00000624277.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000954217.1	CAPRIN2-281	3449	976aa	ENSP00000624276.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000954223.1	CAPRIN2-287	3447	961aa	ENSP00000624282.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91675	-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000921377.1	CAPRIN2-260	3418	941aa	ENSP00000591436.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000686317.1	CAPRIN2-221	3404	961aa	ENSP00000509126.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91675	A0A8I5KRN0	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000954224.1	CAPRIN2-288	3402	961aa	ENSP00000624283.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91675	-	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000695326.1	CAPRIN2-230	3369	903aa	ENSP00000511807.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A8Q3WKC4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000695373.1	CAPRIN2-240	3352	860aa	ENSP00000511846.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A8Q3WKE7	-	-
ENST00000695330.1	CAPRIN2-234	3334	924aa	ENSP00000511811.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A8Q3SHS5	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000954220.1	CAPRIN2-284	3309	926aa	ENSP00000624279.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000433722.6	CAPRIN2-204	3012	706aa	ENSP00000415407.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BM22	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000537108.5	CAPRIN2-207	2187	702aa	ENSP00000438010.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H142	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000689016.1	CAPRIN2-224	1778	543aa	ENSP00000509510.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A8I5KUY8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000541765.5	CAPRIN2-212	630	84aa	ENSP00000444137.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GZX3	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000543380.5	CAPRIN2-214	628	68aa	ENSP00000440785.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GYA1	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000537553.5	CAPRIN2-208	6543	174aa	ENSP00000443145.1	Nonsense mediated decay		H0YGG3	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000454014.6	CAPRIN2-205	4398	278aa	ENSP00000403876.2	Nonsense mediated decay		Q6IMN6-5	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000695369.1	CAPRIN2-236	3770	228aa	ENSP00000511842.1	Nonsense mediated decay		A0A8Q3SHP6	-	-
ENST00000695329.1	CAPRIN2-233	3709	197aa	ENSP00000511810.1	Nonsense mediated decay		A0A8I5KPA6	-	-
ENST00000694880.1	CAPRIN2-229	3685	749aa	ENSP00000511564.1	Nonsense mediated decay		A0A8Q3SHE9	-	-
ENST00000688163.1	CAPRIN2-223	3606	197aa	ENSP00000509088.1	Nonsense mediated decay		A0A8I5KPA6	-	-
ENST00000695328.1	CAPRIN2-232	3561	753aa	ENSP00000511809.1	Nonsense mediated decay		A0A8Q3WKE6	-	-
ENST00000695371.1	CAPRIN2-238	3497	75aa	ENSP00000511844.1	Nonsense mediated decay		A0A8Q3SHW1	-	-
ENST00000690233.1	CAPRIN2-227	3412	197aa	ENSP00000510502.1	Nonsense mediated decay		A0A8I5KPA6	-	-
ENST00000695372.1	CAPRIN2-239	3412	197aa	ENSP00000511845.1	Nonsense mediated decay		A0A8I5KPA6	-	-
ENST00000695398.1	CAPRIN2-242	3342	75aa	ENSP00000511877.1	Nonsense mediated decay		A0A8Q3SHW1	-	-
ENST00000548676.5	CAPRIN2-216	3221	135aa	ENSP00000449139.1	Nonsense mediated decay		H0YID4	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000695327.1	CAPRIN2-231	2881	519aa	ENSP00000511808.1	Nonsense mediated decay		A0A8Q3WLH0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000690097.1	CAPRIN2-225	1131	135aa	ENSP00000510739.2	Nonsense mediated decay		A0A8I5KUX4	-	-
ENST00000620681.1	CAPRIN2-219	926	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000538387.1	CAPRIN2-209	882	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000546129.1	CAPRIN2-215	501	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000534897.5	CAPRIN2-206	478	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000695331.1	CAPRIN2-235	2074	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000553026.5	CAPRIN2-217	1097	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000614865.1	CAPRIN2-218	451	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 4,156 bps, Translation length: 905 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6IMN6

CCDS

This transcript is a member of the Human CCDS set: CCDS55816

Transcript Support Level (TSL)

TSL:1

Version

ENST00000395805.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000395805.6 CAPRIN2-202

Summary

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Transcript: ENST00000395805.6 CAPRIN2-202

Summary

About Us

Get help

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