Transcript: ENST00000338231.10

Description

novel transcript

Location

Chromosome 7: 45,723,783-45,769,132 reverse strand.

About this transcript

This transcript has 13 exons, is associated with 17067 variant alleles and maps to 997 oligo probes.

Gene

This transcript is a product of gene ENSG00000291207.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000413875.6	-	1480	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000428867.1	-	593	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000413357.1	-	487	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000338231.10	-	1831	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000429741.5	-	3006	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000755161.1	-	2979	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000691119.2	-	2283	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000686032.3	-	2250	No protein	-	lncRNA	-	-
ENST00000755166.1	-	2113	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000689506.2	-	2084	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000690171.2	-	2001	No protein	-	lncRNA	-	-
ENST00000701857.2	-	1976	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000702737.1	-	1946	No protein	-	lncRNA	-	-
ENST00000684893.2	-	1945	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000755162.1	-	1932	No protein	-	lncRNA	-	-
ENST00000690179.2	-	1924	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000755182.1	-	1923	No protein	-	lncRNA	-	-
ENST00000428414.5	-	1920	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000688953.1	-	1907	No protein	-	lncRNA	-	-
ENST00000686085.3	-	1855	No protein	-	lncRNA	-	-
ENST00000693141.1	-	1821	No protein	-	lncRNA	-	-
ENST00000755157.1	-	1798	No protein	-	lncRNA	-	-
ENST00000702700.1	-	1776	No protein	-	lncRNA	-	-
ENST00000702829.2	-	1755	No protein	-	lncRNA	-	-
ENST00000755155.1	-	1752	No protein	-	lncRNA	-	-
ENST00000690342.3	-	1740	No protein	-	lncRNA	-	-
ENST00000450436.2	-	1710	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000702903.1	-	1679	No protein	-	lncRNA	-	-
ENST00000688931.2	-	1645	No protein	-	lncRNA	-	-
ENST00000444755.6	-	1637	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000691450.2	-	1636	No protein	-	lncRNA	-	-
ENST00000755187.1	-	1625	No protein	-	lncRNA	-	-
ENST00000686398.1	-	1600	No protein	-	lncRNA	-	-
ENST00000689783.3	-	1568	No protein	-	lncRNA	-	-
ENST00000755163.1	-	1518	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000755179.1	-	1515	No protein	-	lncRNA	-	-
ENST00000702610.2	-	1512	No protein	-	lncRNA	-	-
ENST00000755172.1	-	1510	No protein	-	lncRNA	-	-
ENST00000755176.1	-	1504	No protein	-	lncRNA	-	-
ENST00000755168.1	-	1497	No protein	-	lncRNA	-	-
ENST00000702567.1	-	1447	No protein	-	lncRNA	-	-
ENST00000755167.1	-	1420	No protein	-	lncRNA	-	-
ENST00000755171.1	-	1414	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000687862.2	-	1284	No protein	-	lncRNA	-	-
ENST00000755173.1	-	1181	No protein	-	lncRNA	-	-
ENST00000755165.1	-	1119	No protein	-	lncRNA	-	-
ENST00000755170.1	-	1092	No protein	-	lncRNA	-	-
ENST00000755174.1	-	1053	No protein	-	lncRNA	-	-
ENST00000755164.1	-	1024	No protein	-	lncRNA	-	-
ENST00000755160.1	-	960	No protein	-	lncRNA	-	-
ENST00000755175.1	-	937	No protein	-	lncRNA	-	-
ENST00000755186.1	-	935	No protein	-	lncRNA	-	-
ENST00000755158.1	-	892	No protein	-	lncRNA	-	-
ENST00000755156.1	-	885	No protein	-	lncRNA	-	-
ENST00000755178.1	-	848	No protein	-	lncRNA	-	-
ENST00000755183.1	-	814	No protein	-	lncRNA	-	-
ENST00000755180.1	-	690	No protein	-	lncRNA	-	-
ENST00000701985.2	-	687	No protein	-	lncRNA	-	-
ENST00000755177.1	-	645	No protein	-	lncRNA	-	-
ENST00000755181.1	-	592	No protein	-	lncRNA	-	-
ENST00000755169.1	-	576	No protein	-	lncRNA	-	-
ENST00000755188.1	-	557	No protein	-	lncRNA	-	-
ENST00000755159.1	-	534	No protein	-	lncRNA	-	-
ENST00000755184.1	-	514	No protein	-	lncRNA	-	-
ENST00000755185.1	-	409	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 13, Coding exons: 0, Transcript length: 1,831 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENST00000338231.10

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Annotation Attributes

overlaps pseudogene [Definitions]

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000338231.10

Summary

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Transcript: ENST00000338231.10

Summary

About Us

Get help

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