Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
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ID History
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Gene: CA3-AS1 ENSG00000253549

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Description

CA3 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:51657]

Location

Chromosome 8: 85,440,537-85,469,968 reverse strand.

GRCh38:CM000670.2

About this gene

This gene has 17 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000521761.6	CA3-AS1-202	2042	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000654303.1	CA3-AS1-204	2578	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000660227.1	CA3-AS1-206	1995	No protein	-	lncRNA		-	-
ENST00000517697.7	CA3-AS1-201	1960	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000660134.1	CA3-AS1-205	1870	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000524052.3	CA3-AS1-203	995	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000671294.1	CA3-AS1-208	980	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000754496.1	CA3-AS1-217	861	No protein	-	lncRNA		-	-
ENST00000754489.1	CA3-AS1-210	843	No protein	-	lncRNA		-	-
ENST00000754495.1	CA3-AS1-216	771	No protein	-	lncRNA		-	-
ENST00000754490.1	CA3-AS1-211	720	No protein	-	lncRNA		-	-
ENST00000666645.1	CA3-AS1-207	717	No protein	-	lncRNA		-	-
ENST00000754493.1	CA3-AS1-214	594	No protein	-	lncRNA		-	-
ENST00000754494.1	CA3-AS1-215	571	No protein	-	lncRNA		-	-
ENST00000754488.1	CA3-AS1-209	549	No protein	-	lncRNA		-	-
ENST00000754491.1	CA3-AS1-212	509	No protein	-	lncRNA		-	-
ENST00000754492.1	CA3-AS1-213	465	No protein	-	lncRNA		-	-

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Summary

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