Summary
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Orthologues
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Phenotypes
Genetic Variation
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ID History
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Gene: TRIM40 ENSG00000237046

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Description

tripartite motif containing 40 [Source:HGNC Symbol;Acc:HGNC:18736]

Gene Synonyms

RNF35

Location

Scaffold HSCHR6_MHC_MANN_CTG1: 1,446,830-1,459,457 forward strand.

GRCh38:GL000253.2

View this gene on the primary assembly.

About this gene

This gene has 4 transcripts (splice variants) and 1 gene allele.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000434151.5	TRIM40-230	2086	258aa	ENSP00000388460.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6P9F5-1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000549728.2	TRIM40-232	2006	258aa	ENSP00000447016.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6P9F5-1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000421981.6	TRIM40-229	1640	229aa	ENSP00000403025.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6P9F5-2	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000462556.1	TRIM40-231	941	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

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Summary

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