Description

major histocompatibility complex, class II, DQ beta 1 [Source:HGNC Symbol;Acc:HGNC:4944]

Synonyms

CELIAC1, HLA-DQB, IDDM1

INSDC coordinates

scaffold:GRCh38:GL000252.2:3900296:3910237:-1

Transcripts

This gene has 9 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
HLA-DQB1-002ENST000003990741789269 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8LFT9 G3FDZ4 I4EPF7
L0BX31 Q29996 Q2A662
Q30094 Q4VC56 Q5BLN5
Q5BLN6 Q5BLN7 Q5BLN8
Q67AK1 Q67AK2 Q9TQ90
S6CPY9 T1R3A5 U5IS36
U5TVK0
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-003ENST000004229501734261 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8LFT9 G3FDZ4 I4EPF7
L0BX31 P01920 Q29996
Q2A662 Q30094 Q4VC56
Q5BLN5 Q5BLN6 Q5BLN7
Q5BLN8 Q67AK1 Q67AK2
Q9TQ90 S6CPY9 T1R3A5
U3PYL3 U3Q5G3 U5IS36
U5TVK0
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-001ENST000004161921642261 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8LFT9 G3FDZ4 I4EPF7
L0BX31 P01920 Q29996
Q2A662 Q30094 Q4VC56
Q5BLN5 Q5BLN6 Q5BLN7
Q5BLN8 Q67AK1 Q67AK2
Q9TQ90 S6CPY9 T1R3A5
U3PYL3 U3Q5G3 U5IS36
U5TVK0
NM_001243962
NP_001230891
TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-004ENST000004348861484224 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8LFT9 G3FDZ4 I4EPF7
L0BX31 Q29967 Q29996
Q2A662 Q30094 Q4VC56
Q5BLN5 Q5BLN6 Q5BLN7
Q5BLN8 Q9TQ90 S6CPY9
T1R3A5 U5IS36 U5TVK0
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-007ENST000004307901219134 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q2A662 Q4VC56 Q5BLN5
Q5BLN6 Q5BLN7 Q5BLN8
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-006ENST00000432856484144 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q2A662 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-DQB1-008ENST000004908621423136 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-L0BX31 Q29996 Q30094
Q4VC56 Q5BLN5 Q5BLN6
Q5BLN7 Q5BLN8 Q9TQ90
T1R3A5 U5IS36
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-DQB1-009ENST00000486521428No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-DQB1-005ENST000004795704631No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays