Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SLC35B3 ENSG00000124786

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Description

solute carrier family 35 member B3 [Source:HGNC Symbol;Acc:HGNC:21601]

Gene Synonyms

C6ORF196, CGI-19, DJ453H5.1, PAPST2

Location

Chromosome 6: 8,411,435-8,435,561 reverse strand.

GRCh38:CM000668.2

About this gene

This gene has 6 transcripts (splice variants), 207 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000710437.1	SLC35B3-206	3520	369aa	ENSP00000518269.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS93854	A0A024QZW4	NM_001370479.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000644923.2	SLC35B3-202	3566	401aa	ENSP00000496368.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4508	Q9H1N7-1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000379660.4	SLC35B3-201	2137	401aa	ENSP00000368981.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4508	Q9H1N7-1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000648987.1	SLC35B3-204	1911	369aa	ENSP00000498054.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS93854	A0A024QZW4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000649788.1	SLC35B3-205	2442	251aa	ENSP00000496851.1	Nonsense mediated decay		A0A3B3IRN3	-	-
ENST00000648867.1	SLC35B3-203	2200	283aa	ENSP00000497645.1	Nonsense mediated decay		Q9H1N7-3	-	-

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Summary

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